SRR2933754.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933754.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	666923
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42729	6.406886552120709	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCC	3454	0.5179008671165937	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGC	1795	0.2691465131656878	No Hit
CCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	952	0.1427451145034734	No Hit
CTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGCT	751	0.11260670272280307	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCG	710	0.106459066488935	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	691	0.10361016189275223	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	690	0.10346021954558472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACACGC	20	7.031155E-4	45.0	9
CGGGCTA	35	1.2109012E-7	45.0	6
TCGTCGA	20	7.031155E-4	45.0	19
CGTCGAG	20	7.031155E-4	45.0	20
GATCTAT	20	7.031155E-4	45.0	9
CGTTTTT	18480	0.0	44.366882	1
TTGTTCG	75	0.0	42.0	1
GTTTTTT	20750	0.0	40.53253	2
CTTTTCG	90	0.0	40.0	1
TTACGGG	90	0.0	40.0	3
GATAAGC	40	3.455316E-7	39.375	9
CGGGACG	40	3.455316E-7	39.375	6
GGACCGA	220	0.0	38.863636	8
CGGGTGG	70	0.0	38.571426	6
TTTACGG	70	0.0	38.571426	2
CTACACG	35	6.244347E-6	38.571426	28
TTTTACG	35	6.244347E-6	38.571426	1
AGGCACG	170	0.0	38.38235	10
TTCGTTG	100	0.0	38.25	1
GTTTGCG	120	0.0	37.500004	1