SRR2933753.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933753.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	672418
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42332	6.295488817967396	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCC	3315	0.4929969156090408	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGC	1861	0.2767623710251659	No Hit
CCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	984	0.1463375459907379	No Hit
CTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGCT	750	0.11153776371245266	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCG	729	0.10841470632850399	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	678	0.10083013839605721	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	677	0.10068142137777394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACCCG	25	3.8890714E-5	45.000004	23
TTCGTAA	20	7.031197E-4	45.0	20
TCTCGTC	20	7.031197E-4	45.0	42
GCGATCC	20	7.031197E-4	45.0	9
TCGTACG	20	7.031197E-4	45.0	30
GCTACGA	45	3.8380676E-10	45.0	10
CTACGGC	30	2.1641536E-6	44.999996	12
CGTCGAG	30	2.1641536E-6	44.999996	20
CGTTTTT	18110	0.0	44.3788	1
TACGAAT	50	1.0804797E-9	40.500004	12
TACGGGA	95	0.0	40.263157	4
CGAATAT	45	1.9263098E-8	40.0	14
GTTTTTT	20625	0.0	39.883633	2
GGCGCGA	40	3.4553705E-7	39.375	8
CGCTTTG	80	0.0	39.375	1
GTTGGGC	345	0.0	39.130432	4
GCGGGCA	110	0.0	38.86364	5
GCCATAC	35	6.2444233E-6	38.571426	17
ATATCGT	35	6.2444233E-6	38.571426	16
ACGCGCC	35	6.2444233E-6	38.571426	32