Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933747.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1534145 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 35 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 77974 | 5.082570421961418 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCC | 4357 | 0.28400183815741015 | No Hit |
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGC | 2441 | 0.15911142688598534 | No Hit |
CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC | 2061 | 0.13434192986973198 | Illumina Single End Adapter 1 (95% over 21bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 1608 | 0.1048140821108826 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 49250 | 0.0 | 44.52944 | 1 |
GTTTTTT | 54900 | 0.0 | 40.327866 | 2 |
GGTCGTT | 40 | 3.4592267E-7 | 39.375 | 8 |
CGGGCTC | 115 | 0.0 | 39.130432 | 6 |
TACGCGG | 35 | 6.2496565E-6 | 38.57143 | 2 |
GCGACGG | 30 | 1.14010036E-4 | 37.499996 | 2 |
GGGTACG | 85 | 0.0 | 37.058826 | 7 |
TACGGGT | 85 | 0.0 | 37.058826 | 4 |
TAGGGCG | 135 | 0.0 | 36.666664 | 5 |
GCGGGAC | 510 | 0.0 | 36.17647 | 5 |
TCCGCGA | 25 | 0.0021073283 | 36.0 | 23 |
CCGAATA | 25 | 0.0021073283 | 36.0 | 23 |
GGGACCG | 740 | 0.0 | 35.87838 | 7 |
TTGGGAC | 2660 | 0.0 | 35.864662 | 5 |
TGGGCGA | 2110 | 0.0 | 35.72275 | 6 |
CTTTGCG | 310 | 0.0 | 35.564518 | 1 |
GACCGAT | 595 | 0.0 | 35.54622 | 9 |
GGACCGA | 615 | 0.0 | 35.487804 | 8 |
TTGGGCG | 1680 | 0.0 | 35.357143 | 5 |
TAGCGGG | 255 | 0.0 | 35.294117 | 3 |