Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933746.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1785915 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 93454 | 5.2328358292527914 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCC | 2745 | 0.15370272381384334 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 2142 | 0.11993851891047445 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA | 1838 | 0.1029164321930215 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGAATC | 20 | 7.034338E-4 | 45.0 | 6 |
GCGACCG | 20 | 7.034338E-4 | 45.0 | 31 |
CGTTTTT | 59620 | 0.0 | 44.441463 | 1 |
GTTTTTT | 67050 | 0.0 | 40.03691 | 2 |
TATTGCG | 40 | 3.4596633E-7 | 39.375 | 1 |
GACCGAT | 720 | 0.0 | 37.8125 | 9 |
GGACCGA | 780 | 0.0 | 37.78846 | 8 |
CGTTTGG | 745 | 0.0 | 37.449665 | 2 |
CGACCAA | 570 | 0.0 | 37.105263 | 29 |
GGGACCG | 890 | 0.0 | 36.91011 | 7 |
TGGGCGA | 2905 | 0.0 | 36.712563 | 6 |
GCGAGAC | 595 | 0.0 | 36.68067 | 21 |
TTGGGCG | 2200 | 0.0 | 36.613632 | 5 |
GCGTTTG | 340 | 0.0 | 36.397057 | 1 |
TCAAGCG | 620 | 0.0 | 36.29032 | 17 |
CACGACC | 590 | 0.0 | 36.228813 | 27 |
GGGCGAT | 4370 | 0.0 | 36.092678 | 7 |
CTGCGCG | 150 | 0.0 | 36.000004 | 1 |
CGAGACA | 600 | 0.0 | 36.000004 | 22 |
TACGCGG | 50 | 4.881622E-8 | 36.0 | 2 |