##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933744.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1749590 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.39905806503238 33.0 31.0 34.0 31.0 34.0 2 32.6046953857761 34.0 31.0 34.0 31.0 34.0 3 32.66071536760041 34.0 31.0 34.0 31.0 34.0 4 36.16744551580656 37.0 35.0 37.0 35.0 37.0 5 36.183983104613084 37.0 35.0 37.0 35.0 37.0 6 36.16516383838499 37.0 36.0 37.0 35.0 37.0 7 36.25473968186832 37.0 37.0 37.0 35.0 37.0 8 36.1582022073743 37.0 37.0 37.0 35.0 37.0 9 37.98608359672838 39.0 39.0 39.0 35.0 39.0 10 37.432760818248845 39.0 37.0 39.0 34.0 39.0 11 37.340748975474256 39.0 37.0 39.0 34.0 39.0 12 37.41929709246166 39.0 37.0 39.0 34.0 39.0 13 37.447694031173015 39.0 37.0 39.0 35.0 39.0 14 38.734041118204836 40.0 38.0 41.0 35.0 41.0 15 38.771843117530395 40.0 38.0 41.0 35.0 41.0 16 38.790440617516104 40.0 38.0 41.0 35.0 41.0 17 38.73999165518779 40.0 38.0 41.0 34.0 41.0 18 38.2729193696809 39.0 38.0 40.0 34.0 41.0 19 37.80494573014249 38.0 37.0 40.0 34.0 41.0 20 37.2514560554187 38.0 35.0 40.0 34.0 41.0 21 37.146541189650144 38.0 35.0 40.0 33.0 41.0 22 37.15268834412634 38.0 35.0 40.0 33.0 41.0 23 37.06415560216965 38.0 35.0 40.0 33.0 41.0 24 36.97904594790779 38.0 35.0 40.0 33.0 41.0 25 36.91670505661326 38.0 35.0 40.0 33.0 41.0 26 36.86037128698724 38.0 35.0 40.0 33.0 41.0 27 36.79404774832961 38.0 35.0 40.0 33.0 41.0 28 36.654894575300496 38.0 35.0 40.0 33.0 41.0 29 36.53234357763819 38.0 35.0 40.0 33.0 41.0 30 36.30208734617825 38.0 35.0 40.0 32.0 41.0 31 35.851589801039104 38.0 35.0 40.0 30.0 41.0 32 35.14952817517247 38.0 35.0 40.0 24.0 41.0 33 34.26460199246681 38.0 34.0 40.0 18.0 41.0 34 33.49803896912991 38.0 33.0 40.0 15.0 41.0 35 32.89577100920787 38.0 33.0 40.0 10.0 41.0 36 32.51904503340783 38.0 31.0 40.0 9.0 41.0 37 32.309925182471325 38.0 31.0 40.0 8.0 41.0 38 32.17254271000635 38.0 30.0 40.0 8.0 41.0 39 32.09689870198161 38.0 30.0 40.0 8.0 41.0 40 31.945545527809372 37.0 30.0 40.0 8.0 41.0 41 31.690448047828347 37.0 29.0 40.0 7.0 41.0 42 31.509605107482326 37.0 28.0 40.0 7.0 41.0 43 31.42472179196269 37.0 27.0 40.0 7.0 41.0 44 31.321021496464887 37.0 27.0 40.0 7.0 41.0 45 31.308568293142965 37.0 27.0 40.0 7.0 41.0 46 31.126629667522106 36.0 26.0 40.0 7.0 41.0 47 30.963641195937335 36.0 25.0 40.0 7.0 41.0 48 30.84528375219337 36.0 24.0 40.0 7.0 41.0 49 30.829626941169074 36.0 25.0 40.0 7.0 41.0 50 30.722523562663252 36.0 24.0 40.0 7.0 41.0 51 29.81752867814745 35.0 23.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 5.0 10 1.0 11 4.0 12 11.0 13 11.0 14 19.0 15 39.0 16 106.0 17 227.0 18 541.0 19 1227.0 20 2339.0 21 3919.0 22 6309.0 23 10952.0 24 21710.0 25 45765.0 26 74621.0 27 81983.0 28 69153.0 29 55599.0 30 48189.0 31 46707.0 32 49788.0 33 58699.0 34 81091.0 35 106473.0 36 139153.0 37 183758.0 38 315469.0 39 345625.0 40 94.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.412085117084573 3.3555290096536905 42.17782451888728 36.05456135437446 2 41.64724306837602 3.4318897570287894 40.998862590664096 13.922004583931091 3 15.159265885150235 3.3405540726684535 66.31816597031305 15.182014071868267 4 12.941832086374522 3.6409673123417488 66.03341354260141 17.38378705868232 5 12.640904440468908 4.46938997136472 65.41069622025731 17.479009367909054 6 15.619545150578135 5.252373413199664 66.74380854943158 12.384272886790619 7 62.94549008624878 1.219085614343932 32.420795729285146 3.414628570122143 8 64.78186317937346 1.4764030429986454 30.605856229173696 3.1358775484542094 9 59.522973953897775 4.3994307237695685 32.31991495150292 3.7576803708297373 10 24.021227830520292 26.78238901685538 37.58417686429392 11.612206288330409 11 17.799770231882896 19.586131607976725 47.85492601123692 14.759172148903458 12 16.126921164387085 18.300801902159936 49.50319789207757 16.06907904137541 13 16.66927680199361 17.937231008407682 51.523899885115945 13.869592304482763 14 15.515006372921656 19.650318074520314 50.19713189947359 14.637543653084437 15 13.759909464503112 19.9007767534108 51.36986379666093 14.969449985425157 16 15.277750787327316 20.219994398687692 49.46856120576821 15.033693608216783 17 15.46882412450917 19.578872764476248 48.81326482204402 16.139038288970557 18 15.842968924147943 18.791431135294552 49.83270366200081 15.53289627855669 19 15.72248355328963 20.991660903411656 48.358358243931434 14.927497299367282 20 16.671505895666986 22.404391886099027 46.48511937082402 14.438982847409964 21 16.34337187569659 22.76990609228448 47.18088237815717 13.705839653861762 22 15.741516583885367 20.95319474848393 46.76547076743694 16.53981790019376 23 13.635708937522505 22.775450248343898 46.3435433444407 17.2452974696929 24 13.792888619619454 22.313513451722976 47.01850147748901 16.87509645116856 25 14.228362073400053 23.428117444658465 45.673672117467525 16.669848364473964 26 14.593761967089433 23.647368812121698 45.78832755102624 15.97054166976263 27 14.683840213992994 22.55648466212084 46.86292217033705 15.896752953549118 28 14.197097605724771 21.838030624317696 46.949971136094746 17.01490063386279 29 16.005292668568064 20.74680353682863 46.03718585497173 17.21071793963157 30 18.073891597459976 20.927531593116104 45.15840854142971 15.840168267994216 31 17.474894118050514 22.48663972702176 44.10244685897839 15.936019295949336 32 18.040283723615246 22.36152470007259 43.19532004641087 16.40287152990129 33 18.894769631742296 22.46794963391423 41.968975588566465 16.66830514577701 34 19.576243577066627 22.706748438205523 40.48194148343326 17.23506650129459 35 20.799444441269095 23.5938705639607 38.630250515835144 16.976434478935065 36 20.736915505918528 24.52551740693534 39.04777690773267 15.689790179413462 37 20.03212181139581 25.07227407564058 39.58870363913831 15.306900473825296 38 20.3540829565784 24.943958298801434 38.858018164255625 15.843940580364544 39 21.954972307797828 24.327299538749077 36.991237947176195 16.7264902062769 40 22.657937002383417 24.328385507461746 36.63366845946764 16.38000903068719 41 20.18375733743334 24.97893792259901 37.42545396350002 17.41185077646763 42 19.3145251173132 25.408009876599664 38.64808326522214 16.629381740865 43 18.49667636417675 25.203733446121664 39.26759983767625 17.031990352025332 44 19.57430026463343 25.759463645768438 36.17716150641007 18.48907458318806 45 20.810704222132042 24.698243588497874 35.44344675038152 19.047605438988562 46 20.821792534250882 25.179156259466502 35.71791105344681 18.281140152835807 47 18.75222194914237 26.059133854217276 36.940940448905174 18.247703747735184 48 18.31337627672769 25.693962585520037 37.57463177087203 18.41802936688024 49 19.643802262244296 24.50539840762693 36.93036654301865 18.920432787110123 50 18.76862579232849 24.159031544533292 36.41510296698083 20.657239696157387 51 18.213124217673855 23.950811332940862 35.54049805954538 22.295566389839905 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 582.0 1 1671.0 2 2760.0 3 64858.0 4 126956.0 5 83970.5 6 40985.0 7 40156.5 8 39328.0 9 39307.0 10 39286.0 11 39002.0 12 38718.0 13 37508.5 14 36299.0 15 35028.0 16 33757.0 17 31962.0 18 30167.0 19 28808.5 20 27450.0 21 26025.0 22 24600.0 23 23955.5 24 23311.0 25 23323.5 26 23970.5 27 24605.0 28 26375.5 29 28146.0 30 30362.5 31 32579.0 32 35438.0 33 38297.0 34 42545.0 35 46793.0 36 51326.5 37 55860.0 38 58777.0 39 61694.0 40 67784.5 41 73875.0 42 80391.0 43 86907.0 44 95798.0 45 104689.0 46 119409.0 47 134129.0 48 143265.0 49 152401.0 50 144318.0 51 136235.0 52 115266.5 53 94298.0 54 78477.5 55 62657.0 56 52570.5 57 42484.0 58 36635.5 59 30787.0 60 26044.0 61 21301.0 62 18028.5 63 14756.0 64 11371.0 65 7986.0 66 6132.0 67 4278.0 68 3324.0 69 2370.0 70 2030.0 71 1690.0 72 1453.0 73 1216.0 74 1014.0 75 660.0 76 508.0 77 438.5 78 369.0 79 298.0 80 227.0 81 151.0 82 75.0 83 46.5 84 18.0 85 11.5 86 5.0 87 5.0 88 5.0 89 3.5 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1749590.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.938892785846036 #Duplication Level Percentage of deduplicated Percentage of total 1 77.02064445236134 31.531399055319888 2 8.709599191346264 7.1312269500443195 3 3.83035205074222 4.704311158121438 4 2.201803968158321 3.6055766635153543 5 1.4299738842677134 2.927077376729786 6 0.9814153555763094 2.4106834812192894 7 0.7926502505320028 2.271515653624256 8 0.6362914467749997 2.0839253856058058 9 0.5338620303375006 1.9670148380178922 >10 3.692609725480947 26.570760538357096 >50 0.10474098329341416 2.945300150658811 >100 0.06087858173426105 4.627395722983526 >500 0.002379117559736413 0.6934195903659283 >1k 0.0026590137432348144 1.8606539384222 >5k 0.0 0.0 >10k+ 1.3994809174920075E-4 4.6697394970144055 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 81506 4.65857715236141 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCC 4755 0.2717779594076326 No Hit CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT 2612 0.14929211986808338 TruSeq Adapter, Index 21 (95% over 23bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGC 2564 0.14654861996239119 No Hit CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC 2231 0.12751558936665164 No Hit CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG 1890 0.10802530878663001 TruSeq Adapter, Index 21 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.7146874410576193E-4 0.0 0.0 0.16586743179830704 0.0 2 1.7146874410576193E-4 0.0 0.0 0.5072617013128791 0.0 3 1.7146874410576193E-4 0.0 0.0 0.8187632531050132 0.0 4 1.7146874410576193E-4 0.0 0.0 1.1962802713778657 0.0 5 2.286249921410159E-4 0.0 0.0 2.0148148994907378 0.0 6 2.286249921410159E-4 0.0 0.0 3.2314999514171894 0.0 7 2.286249921410159E-4 0.0 0.0 4.366108631165016 0.0 8 2.286249921410159E-4 0.0 0.0 5.99523316891386 0.0 9 2.286249921410159E-4 0.0 0.0 7.0764579129967595 0.0 10 2.8578124017626986E-4 0.0 0.0 8.4753570836596 0.0 11 2.8578124017626986E-4 0.0 0.0 10.684331757726095 0.0 12 2.8578124017626986E-4 0.0 0.0 12.486353945781584 0.0 13 2.8578124017626986E-4 0.0 0.0 13.320949479592361 0.0 14 2.8578124017626986E-4 0.0 0.0 13.69949531032985 0.0 15 2.8578124017626986E-4 0.0 0.0 14.071582485039352 0.0 16 2.8578124017626986E-4 0.0 0.0 14.747055024319984 0.0 17 2.8578124017626986E-4 0.0 0.0 15.657496899273545 0.0 18 2.8578124017626986E-4 0.0 0.0 16.576112117696145 0.0 19 2.8578124017626986E-4 0.0 0.0 17.140472910796245 0.0 20 2.8578124017626986E-4 0.0 0.0 17.676712829862996 0.0 21 2.8578124017626986E-4 0.0 0.0 18.23667259186438 0.0 22 2.8578124017626986E-4 0.0 0.0 18.769997542281335 0.0 23 2.8578124017626986E-4 0.0 0.0 19.24296549477306 0.0 24 3.4293748821152386E-4 0.0 0.0 19.580015889436954 0.0 25 3.4293748821152386E-4 0.0 0.0 19.86791191079053 0.0 26 3.4293748821152386E-4 0.0 0.0 20.124714933212925 0.0 27 3.4293748821152386E-4 0.0 0.0 20.388148080407408 0.0 28 3.4293748821152386E-4 0.0 0.0 20.64066438422716 0.0 29 3.4293748821152386E-4 0.0 0.0 20.915585937276735 0.0 30 4.000937362467778E-4 0.0 0.0 21.205539583559577 0.0 31 4.000937362467778E-4 0.0 0.0 21.463257105950536 0.0 32 4.000937362467778E-4 0.0 0.0 21.73669259655119 0.0 33 4.000937362467778E-4 0.0 0.0 21.986179619225076 0.0 34 4.000937362467778E-4 0.0 0.0 22.24429723535228 0.0 35 4.000937362467778E-4 0.0 0.0 22.511274069924955 0.0 36 4.000937362467778E-4 0.0 0.0 22.779679810698507 0.0 37 4.000937362467778E-4 0.0 0.0 23.046370864031 0.0 38 4.000937362467778E-4 0.0 0.0 23.318891854663093 0.0 39 4.572499842820318E-4 0.0 0.0 23.651598374476308 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCGACG 25 3.891645E-5 45.0 1 TATCGCG 25 3.891645E-5 45.0 1 CGTTTTT 46410 0.0 44.587914 1 GTTTTTT 51890 0.0 40.286667 2 GCCGATC 135 0.0 40.000004 9 GTTAGCG 45 1.9292202E-8 40.0 1 GAGCGAC 115 0.0 39.130436 18 CTAGCGG 75 0.0 39.0 2 TAGTGCG 35 6.250162E-6 38.571426 1 TACGGGA 265 0.0 38.207546 4 TTGTACG 60 1.5643309E-10 37.500004 1 CCGTCGG 30 1.1401655E-4 37.500004 2 GCGATAT 60 1.5643309E-10 37.500004 9 CGAGCGG 30 1.1401655E-4 37.500004 2 GCGTCCG 30 1.1401655E-4 37.500004 1 CACGACC 225 0.0 37.0 27 TTGGGAC 4070 0.0 36.7629 5 TGGGCGA 2700 0.0 36.666668 6 TGCGGGA 2300 0.0 36.586956 4 GCGATCG 210 0.0 36.42857 9 >>END_MODULE