##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933743.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1766427 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31976470015461 33.0 31.0 34.0 30.0 34.0 2 32.53924164429099 34.0 31.0 34.0 31.0 34.0 3 32.604523708027564 34.0 31.0 34.0 31.0 34.0 4 36.08592429803213 37.0 35.0 37.0 35.0 37.0 5 36.15325796084412 37.0 35.0 37.0 35.0 37.0 6 36.15356196434951 37.0 36.0 37.0 35.0 37.0 7 36.17734953100241 37.0 37.0 37.0 35.0 37.0 8 36.11833039236832 37.0 37.0 37.0 35.0 37.0 9 37.9500873797785 39.0 38.0 39.0 35.0 39.0 10 37.44795624161089 39.0 37.0 39.0 34.0 39.0 11 37.3443827568306 39.0 37.0 39.0 34.0 39.0 12 37.399829712747824 39.0 37.0 39.0 34.0 39.0 13 37.438973136166965 39.0 37.0 39.0 35.0 39.0 14 38.75482541876907 40.0 38.0 41.0 35.0 41.0 15 38.777056170450294 40.0 38.0 41.0 35.0 41.0 16 38.852254296384736 40.0 38.0 41.0 35.0 41.0 17 38.82925249670663 40.0 38.0 41.0 35.0 41.0 18 38.408011200009966 39.0 38.0 41.0 35.0 41.0 19 37.977219551105144 39.0 37.0 41.0 35.0 41.0 20 37.37880818171371 39.0 35.0 41.0 34.0 41.0 21 37.30826181891468 38.0 35.0 40.0 34.0 41.0 22 37.28780017515584 38.0 35.0 40.0 34.0 41.0 23 37.13806910786577 38.0 35.0 40.0 33.0 41.0 24 37.063695244694514 38.0 35.0 40.0 33.0 41.0 25 37.01023421856663 38.0 35.0 40.0 33.0 41.0 26 36.995125187737735 38.0 35.0 40.0 33.0 41.0 27 36.929319468056136 38.0 35.0 40.0 33.0 41.0 28 36.85115037304117 38.0 35.0 40.0 33.0 41.0 29 36.668373501990175 38.0 35.0 40.0 33.0 41.0 30 36.35772267973712 38.0 35.0 40.0 32.0 41.0 31 35.9012566044337 38.0 35.0 40.0 30.0 41.0 32 35.284005509426656 38.0 35.0 40.0 25.0 41.0 33 34.335377572919796 38.0 34.0 40.0 18.0 41.0 34 33.58299040945366 38.0 33.0 40.0 15.0 41.0 35 33.03682575051219 38.0 33.0 40.0 10.0 41.0 36 32.66656929496662 38.0 31.0 40.0 10.0 41.0 37 32.49583594453663 38.0 31.0 40.0 8.0 41.0 38 32.33554570893674 38.0 31.0 40.0 8.0 41.0 39 32.30249028122872 38.0 31.0 40.0 8.0 41.0 40 32.147175626278354 38.0 30.0 40.0 8.0 41.0 41 31.92759055426576 37.0 30.0 40.0 8.0 41.0 42 31.68670712121135 37.0 29.0 40.0 7.0 41.0 43 31.625253123961535 37.0 28.0 40.0 7.0 41.0 44 31.542747591607238 37.0 28.0 40.0 7.0 41.0 45 31.502984838886633 37.0 27.0 40.0 7.0 41.0 46 31.3069467348495 37.0 26.0 40.0 7.0 41.0 47 31.23479260677062 37.0 26.0 40.0 7.0 41.0 48 31.073810013094228 36.0 26.0 40.0 7.0 41.0 49 31.04378046757664 36.0 26.0 40.0 7.0 41.0 50 30.86679324987673 36.0 26.0 40.0 7.0 41.0 51 30.093787062810975 35.0 24.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 6.0 10 4.0 11 8.0 12 15.0 13 10.0 14 24.0 15 31.0 16 113.0 17 245.0 18 592.0 19 1271.0 20 2314.0 21 3891.0 22 6206.0 23 10781.0 24 21855.0 25 44772.0 26 74532.0 27 80437.0 28 68811.0 29 55142.0 30 47933.0 31 46560.0 32 48723.0 33 57281.0 34 79806.0 35 104123.0 36 136625.0 37 177653.0 38 317825.0 39 378650.0 40 186.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.586955475657923 3.528139006027421 42.0726132469669 35.81229227134776 2 41.62187285407209 3.4644511208218627 40.9451395387412 13.96853648636485 3 15.327777485285269 3.417463614403539 66.05401751671594 15.200741383595245 4 13.162219553935714 3.708446485476048 65.69362900363276 17.43570495695548 5 12.709158091446746 4.5360493244272195 65.32673017339522 17.428062410730814 6 15.619779362521067 5.309871282538141 66.61367834617565 12.45667100876515 7 63.02173823203563 1.2767014996940151 32.24367607605635 3.4578841922140002 8 64.91318350546045 1.48916428473976 30.455999596926453 3.1416526128733318 9 59.678888513366246 4.426223104606078 32.10775197616431 3.787136405863362 10 24.09123048957019 26.83331946352722 37.44598559691399 11.629464449988593 11 17.894370953342538 19.662120200834792 47.7194925122861 14.724016333536568 12 16.192743883557036 18.421253751216437 49.35652591360979 16.029476451616738 13 16.7318547553904 18.019312431252466 51.39006593535991 13.858766877997223 14 15.58632199349308 19.721618838480165 49.99504649781735 14.69701267020941 15 13.801815755760074 20.022508713917983 51.24055508662402 14.935120443697928 16 15.38710628857009 20.274599516424967 49.24658647088162 15.09170772412333 17 15.546863810392392 19.6307574555869 48.753953602384925 16.068425131635784 18 15.929783681974971 18.905168455871653 49.58325478494158 15.581793077211795 19 15.730567977051981 21.093031299906535 48.18834857030605 14.988052152735436 20 16.76701046802387 22.500335422862083 46.35526970545627 14.377384403657778 21 16.435776853501448 22.844589671693196 47.075367394180454 13.6442660806249 22 15.844696667340344 20.981280290665847 46.669519883923876 16.504503158069934 23 13.791625694127186 22.865139629319525 46.226535260160766 17.116699416392525 24 13.861540839219511 22.409643874329365 46.833976156388005 16.894839130063115 25 14.252669371561916 23.65339750807704 45.479094239388324 16.61483888097272 26 14.690785410322645 23.654359902786812 45.66676120779404 15.988093479096504 27 14.75826626291378 22.67917100451929 46.64398811838814 15.918574614178791 28 14.292806892104798 21.858191705629498 46.886738031064965 16.962263371200734 29 16.16783484400997 20.81161576447824 45.907642942504836 17.11290644900695 30 18.125175849327483 21.007378170736747 45.06226410714963 15.80518187278614 31 17.605426094596606 22.55219151428279 43.92312843949962 15.919253951620984 32 18.09726640274407 22.4742941542447 43.08624132217182 16.342198120839413 33 18.90528167877869 22.5219043866517 41.817805094691145 16.755008839878467 34 19.66546027659224 22.832304986280214 40.404783214930475 17.09745152219707 35 20.72477379478461 23.692063130828505 38.577761775606916 17.005401298779965 36 20.74560680967852 24.611489747382713 38.9786840894076 15.664219353531166 37 19.963349744993707 25.171037353935372 39.59489976092983 15.270713140141087 38 20.36444189315494 25.004826126412244 38.8453641163773 15.78536786405552 39 21.871948288833902 24.439221094333362 37.070708271556086 16.61812234527665 40 22.64016571304673 24.406103394026474 36.711282153182665 16.242448739744127 41 20.188097215452437 25.13180561664875 37.42690753707908 17.25318963081973 42 19.31260108682668 25.47538052803767 38.69658921653711 16.515429168598533 43 18.555536118956514 25.319189527786882 39.14534820855886 16.979926144697743 44 19.553369598630454 25.8570549476429 36.203873695318286 18.385701758408356 45 20.786083998942498 24.871562764835456 35.30805405488028 19.034299181341773 46 20.803520326625442 25.393746812067526 35.56886302122873 18.233869840078302 47 18.672268936106615 26.180476181580104 36.94106804300433 18.206186839308955 48 18.446672293845147 25.88836108143727 37.35970974175553 18.30525688296205 49 19.55721917746955 24.66838425816634 36.956919249988815 18.81747731437529 50 18.839385946886004 24.308448636711283 36.30379291077412 20.548372505628592 51 18.17929639888883 24.084437115148262 35.59196049426328 22.14430599169963 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 569.0 1 1787.0 2 3005.0 3 65240.0 4 127475.0 5 84786.5 6 42098.0 7 40842.5 8 39587.0 9 39648.0 10 39709.0 11 39235.5 12 38762.0 13 37611.0 14 36460.0 15 35160.5 16 33861.0 17 32055.5 18 30250.0 19 28594.0 20 26938.0 21 25582.5 22 24227.0 23 23902.5 24 23578.0 25 23539.0 26 24258.0 27 25016.0 28 26718.0 29 28420.0 30 30589.5 31 32759.0 32 35965.5 33 39172.0 34 43679.0 35 48186.0 36 52449.5 37 56713.0 38 59804.0 39 62895.0 40 69304.0 41 75713.0 42 81774.0 43 87835.0 44 96666.0 45 105497.0 46 120282.5 47 135068.0 48 144134.0 49 153200.0 50 145055.5 51 136911.0 52 116100.5 53 95290.0 54 79298.5 55 63307.0 56 53368.5 57 43430.0 58 37156.0 59 30882.0 60 26087.0 61 21292.0 62 18015.5 63 14739.0 64 11489.0 65 8239.0 66 6344.5 67 4450.0 68 3476.5 69 2503.0 70 2095.0 71 1687.0 72 1477.5 73 1268.0 74 1042.5 75 645.0 76 473.0 77 411.5 78 350.0 79 270.0 80 190.0 81 132.0 82 74.0 83 46.0 84 18.0 85 12.5 86 7.0 87 5.0 88 3.0 89 3.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1766427.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.64772944380871 #Duplication Level Percentage of deduplicated Percentage of total 1 76.86747554386444 31.24488348935584 2 8.811049424413426 7.1629830623916675 3 3.773824915379509 4.601922423859516 4 2.1323480095147693 3.4670041988320155 5 1.4276377705685883 2.9015116920917112 6 1.078934532102161 2.631374336908259 7 0.7842792330109613 2.2315419050279157 8 0.6339049699816852 2.061343817032098 9 0.5334715371231192 1.951596603625798 >10 3.7845044894769373 26.926594075700745 >50 0.10416031347920353 2.8990371337319623 >100 0.06349288389585989 4.793928200811123 >500 0.002247486715214947 0.6725457980544469 >1k 0.0025284225546168154 1.8233362352551752 >5k 0.0 0.0 >10k+ 1.404679197009342E-4 4.630397027321631 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 81097 4.591019045791307 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCC 4817 0.2726973715868247 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGC 2731 0.15460587955233926 No Hit CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT 2714 0.15364348484256637 TruSeq Adapter, Index 21 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC 2331 0.13196129814591828 No Hit CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG 1878 0.10631630970314651 TruSeq Adapter, Index 21 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.830572675802623E-4 0.0 0.0 0.16558850153445345 0.0 2 2.830572675802623E-4 0.0 0.0 0.4967088931498443 0.0 3 2.830572675802623E-4 0.0 0.0 0.8021842963224634 0.0 4 3.3966872109631477E-4 0.0 0.0 1.1844248304628495 0.0 5 3.3966872109631477E-4 0.0 0.0 2.0053475178991262 0.0 6 3.3966872109631477E-4 0.0 0.0 3.1831488083005977 0.0 7 3.3966872109631477E-4 0.0 0.0 4.305980377337982 0.0 8 3.3966872109631477E-4 0.0 0.0 5.887704388576488 0.0 9 3.3966872109631477E-4 0.0 0.0 6.9443005570000915 0.0 10 3.3966872109631477E-4 0.0 0.0 8.347075763674354 0.0 11 3.3966872109631477E-4 0.0 0.0 10.491177954141326 0.0 12 3.3966872109631477E-4 0.0 0.0 12.289837055253345 0.0 13 3.3966872109631477E-4 0.0 0.0 13.106230826408337 0.0 14 3.962801746123672E-4 0.0 0.0 13.485187896244792 0.0 15 3.962801746123672E-4 0.0 0.0 13.841670219035375 0.0 16 4.528916281284197E-4 0.0 0.0 14.506232071860314 0.0 17 5.095030816444721E-4 0.0 0.0 15.37952035379894 0.0 18 5.095030816444721E-4 0.0 0.0 16.266168938767354 0.0 19 5.095030816444721E-4 0.0 0.0 16.816885158571512 0.0 20 5.095030816444721E-4 0.0 0.0 17.334200620801198 0.0 21 5.095030816444721E-4 0.0 0.0 17.878632969265077 0.0 22 5.095030816444721E-4 0.0 0.0 18.399458341612757 0.0 23 5.095030816444721E-4 0.0 0.0 18.859539624337717 0.0 24 5.661145351605246E-4 0.0 0.0 19.189414563975756 0.0 25 5.661145351605246E-4 0.0 0.0 19.46567845713409 0.0 26 6.227259886765771E-4 0.0 0.0 19.725808086040352 0.0 27 6.227259886765771E-4 0.0 0.0 19.97908772907117 0.0 28 6.793374421926295E-4 0.0 0.0 20.226876061110932 0.0 29 6.793374421926295E-4 0.0 0.0 20.49510112786999 0.0 30 6.793374421926295E-4 0.0 0.0 20.77776211527564 0.0 31 6.793374421926295E-4 0.0 0.0 21.04479834151086 0.0 32 6.793374421926295E-4 0.0 0.0 21.308834160709726 0.0 33 6.793374421926295E-4 0.0 0.0 21.55803777908739 0.0 34 6.793374421926295E-4 0.0 0.0 21.812506262642046 0.0 35 6.793374421926295E-4 0.0 0.0 22.082259838646035 0.0 36 6.793374421926295E-4 0.0 0.0 22.34963573360235 0.0 37 7.35948895708682E-4 0.0 0.0 22.614407501696927 0.0 38 7.35948895708682E-4 0.0 0.0 22.878443320895798 0.0 39 7.35948895708682E-4 0.0 0.0 23.213866182978407 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGAC 20 7.0343155E-4 45.000004 9 GTTCGAC 20 7.0343155E-4 45.000004 15 CAGTCGT 20 7.0343155E-4 45.000004 25 TTCGACG 20 7.0343155E-4 45.000004 1 GTTAGCG 35 1.2124292E-7 45.0 1 GAACGCG 25 3.8916594E-5 45.0 31 CGTTTTT 45600 0.0 44.526314 1 AGCTACG 50 1.0822987E-9 40.5 9 GTTTTTT 51490 0.0 39.756264 2 CTAGCGG 65 9.094947E-12 38.07692 2 GAGCGAC 60 1.5643309E-10 37.500004 18 CACGACC 230 0.0 37.173916 27 GCGATCG 225 0.0 37.0 9 GGACCGA 730 0.0 36.67808 8 TCAAGCG 265 0.0 36.509434 17 TTGGGAC 4120 0.0 36.425972 5 TGGGCGA 2810 0.0 36.272243 6 GACCGAT 705 0.0 36.063828 9 CGAGTGA 25 0.0021074142 36.0 22 AACCCGC 25 0.0021074142 36.0 19 >>END_MODULE