##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933730.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 265635 Sequences flagged as poor quality 0 Sequence length 51 %GC 32 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.958593558830728 33.0 31.0 34.0 30.0 34.0 2 32.22306548459352 34.0 31.0 34.0 30.0 34.0 3 32.18924464020178 33.0 31.0 34.0 30.0 34.0 4 35.9022192105709 37.0 35.0 37.0 35.0 37.0 5 35.952494964895436 37.0 35.0 37.0 35.0 37.0 6 35.940892578161765 37.0 35.0 37.0 35.0 37.0 7 35.96515142959324 37.0 35.0 37.0 35.0 37.0 8 35.778353756093885 37.0 35.0 37.0 35.0 37.0 9 37.60697950194816 39.0 37.0 39.0 35.0 39.0 10 37.22834716810661 39.0 37.0 39.0 34.0 39.0 11 37.279018201667704 39.0 37.0 39.0 34.0 39.0 12 37.349027801306306 39.0 37.0 39.0 34.0 39.0 13 37.29597379863346 39.0 37.0 39.0 34.0 39.0 14 38.362456001656405 40.0 38.0 41.0 33.0 41.0 15 38.38487021665067 40.0 38.0 41.0 33.0 41.0 16 38.446499896474485 40.0 38.0 41.0 34.0 41.0 17 38.43974626837578 40.0 38.0 41.0 33.0 41.0 18 37.86562388239501 39.0 38.0 40.0 34.0 41.0 19 37.22164247934195 37.0 37.0 40.0 34.0 41.0 20 36.40079055847309 36.0 35.0 40.0 33.0 41.0 21 36.26003726918516 35.0 35.0 40.0 33.0 41.0 22 36.255956481638336 35.0 35.0 40.0 33.0 41.0 23 36.198125247049525 35.0 35.0 40.0 33.0 41.0 24 36.010947352570255 35.0 35.0 40.0 32.0 41.0 25 35.88903194232688 35.0 35.0 40.0 32.0 41.0 26 35.85232744179043 35.0 35.0 40.0 32.0 41.0 27 35.80479605473676 35.0 35.0 40.0 32.0 41.0 28 35.69164078528809 35.0 35.0 40.0 31.0 41.0 29 35.58709883863196 35.0 35.0 40.0 31.0 41.0 30 35.34936661208049 35.0 35.0 40.0 30.0 41.0 31 34.792647806200236 35.0 35.0 40.0 27.0 41.0 32 34.14583545090067 35.0 34.0 40.0 22.0 41.0 33 33.39606226589117 35.0 33.0 40.0 18.0 41.0 34 32.710264084175655 35.0 33.0 40.0 12.0 41.0 35 32.19949931296704 35.0 32.0 40.0 10.0 41.0 36 31.878419635966647 35.0 31.0 40.0 9.0 41.0 37 31.62583996837766 35.0 31.0 40.0 8.0 41.0 38 31.51750334105069 35.0 30.0 40.0 8.0 41.0 39 31.396355901895458 35.0 30.0 40.0 8.0 41.0 40 31.13123647109756 35.0 29.0 40.0 8.0 41.0 41 30.900272930901426 35.0 27.0 40.0 7.0 41.0 42 30.717537222128108 35.0 26.0 39.0 7.0 41.0 43 30.536442863327498 35.0 25.0 39.0 7.0 41.0 44 30.382532422308806 35.0 24.0 39.0 7.0 41.0 45 30.368257195023247 35.0 23.0 39.0 7.0 41.0 46 29.981899975530332 35.0 23.0 39.0 7.0 41.0 47 29.717367816741017 35.0 23.0 39.0 7.0 40.0 48 29.65523368532008 35.0 23.0 39.0 7.0 40.0 49 29.667084533288158 35.0 23.0 39.0 7.0 40.0 50 29.52610913471493 35.0 22.0 39.0 7.0 40.0 51 28.534530464735447 35.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 7.0 13 5.0 14 18.0 15 7.0 16 30.0 17 66.0 18 163.0 19 389.0 20 666.0 21 1013.0 22 1652.0 23 2493.0 24 4267.0 25 7766.0 26 11334.0 27 11504.0 28 10012.0 29 8627.0 30 8514.0 31 8631.0 32 9516.0 33 10859.0 34 14369.0 35 24718.0 36 33479.0 37 27989.0 38 42949.0 39 24585.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 14.883580853426695 3.447964311931786 31.723982155965892 49.94447267867563 2 53.0046868823762 3.81990325070115 29.866546200613627 13.308863666309033 3 11.824872475389162 4.1146686242400285 70.12630112748697 13.934157772883845 4 10.427842716509495 3.605323093718825 70.77907655241215 15.187757637359534 5 8.914111468744707 4.412069192689216 70.40826698289005 16.26555235567602 6 11.660361021702712 5.265872343629416 73.22830199333671 9.84546464133115 7 42.35209968565889 2.5828674685188324 49.83040638470081 5.234626461121464 8 40.324505430383795 3.043273664991436 49.49159561051819 7.140625294106575 9 36.37321889058294 4.591262446590246 52.19907015265308 6.836448510173734 10 17.972029288309148 15.805899072034935 55.16667607807706 11.055395561578859 11 11.338867242644984 13.27046511190167 57.53722212810813 17.85344551734523 12 10.447794906544695 11.47702674722834 62.30880719784667 15.766371148380296 13 14.763867713215504 12.254785702185329 62.26664407928172 10.714702505317447 14 11.981101887928924 14.578651156662337 60.49428727389087 12.945959681517872 15 7.550586330867544 14.044459502701075 62.04716998889454 16.357784177536846 16 6.811225930317917 14.851958514502982 59.66871835413256 18.66809720104655 17 6.645961563799951 14.960001505825662 58.073296064148174 20.320740866226213 18 7.216293033674026 13.801645114536864 62.225610329964056 16.75645152182506 19 7.517081709865041 15.570237355770136 62.91151391947597 14.001167014888852 20 7.753872795377115 19.84791160803358 59.68904700058351 12.7091685960058 21 7.666911363336909 20.47847610442901 59.59229770173358 12.2623148305005 22 6.053795621811885 20.077173565230485 56.31900916671372 17.550021646243906 23 6.76642761684266 19.46016149980236 54.01773109718222 19.755679786172756 24 8.52334970918742 18.8570783217573 53.258418506597394 19.361153462457885 25 7.380051574528959 19.876522295631226 51.47552092156531 21.267905208274513 26 8.144258098518645 20.073032544657142 53.60965234250005 18.17305701432417 27 9.608673555819076 18.229525476687936 56.45942740979163 15.702373557701357 28 7.440661057466072 15.162535057503717 56.56257646770945 20.83422741732076 29 10.43198373708284 13.1695747924784 54.835394432209604 21.56304703822915 30 14.998400060233028 15.672257044440679 51.05765430007341 18.271688595252886 31 12.51039960848533 21.685395373350648 47.90784346942233 17.896361548741694 32 11.149133209102716 20.59781278822444 45.825663033862256 22.427390968810588 33 13.077342970617579 18.026615468594123 44.38759952566492 24.508442035123384 34 13.611158168163081 17.263538313851715 44.95002541080807 24.175278107177142 35 16.15223897453272 17.054605003105767 41.83334274474373 24.959813277617783 36 15.244979012554822 19.302426261599564 42.21469309390705 23.237901631938563 37 10.619459032130555 20.361021702712367 47.60743124964707 21.412088015510005 38 9.984753515161781 19.158243454364072 45.83130988009863 25.025693150375517 39 12.440002258738495 19.750409396352136 41.28785739830971 26.521730946599657 40 13.364202759425527 22.3991567376287 42.70483934722458 21.531801155721197 41 12.331959267415815 23.953168821879647 44.27880362151072 19.43606828919382 42 13.617181470815215 23.164492630865663 46.22545974739774 16.992866150921376 43 13.26557117849681 19.902874244734317 47.81674101680878 19.014813559960096 44 12.781071771415665 16.569352683193102 44.61949667777213 26.0300788676191 45 17.246221318726825 14.535735125265873 42.61863082801589 25.599412727991417 46 17.405462382592653 16.362678110941705 47.3796751181132 18.852184388352438 47 10.448547819376213 21.485120560167147 49.84546464133115 18.220866979125493 48 10.341634197300808 19.67624748244772 50.614941555141456 19.36717676511002 49 16.47185047151166 15.097784553993263 49.84922920548873 18.581135769006345 50 15.064656389406517 13.250136465450712 46.04513712424944 25.64007002089333 51 12.437367063828185 12.998663579724056 43.57595949328966 30.988009863158094 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1085.0 1 1319.5 2 1554.0 3 24661.0 4 47768.0 5 28187.5 6 8607.0 7 8064.5 8 7522.0 9 7195.0 10 6868.0 11 6606.0 12 6344.0 13 5978.5 14 5613.0 15 5126.5 16 4640.0 17 4221.0 18 3802.0 19 3393.5 20 2985.0 21 2653.5 22 2322.0 23 2115.5 24 1909.0 25 1749.5 26 1511.5 27 1433.0 28 1367.5 29 1302.0 30 1351.0 31 1400.0 32 1429.0 33 1458.0 34 1530.5 35 1603.0 36 2017.0 37 2431.0 38 2865.0 39 3299.0 40 5337.0 41 7375.0 42 10051.0 43 12727.0 44 13485.5 45 14244.0 46 18735.0 47 23226.0 48 28025.5 49 32825.0 50 30861.5 51 28898.0 52 22272.5 53 15647.0 54 11185.0 55 6723.0 56 4824.5 57 2926.0 58 2300.5 59 1675.0 60 1465.5 61 1256.0 62 1077.0 63 898.0 64 737.5 65 577.0 66 490.0 67 403.0 68 331.0 69 259.0 70 213.5 71 168.0 72 142.0 73 116.0 74 97.5 75 63.5 76 48.0 77 32.5 78 17.0 79 12.0 80 7.0 81 5.5 82 4.0 83 3.0 84 2.0 85 1.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 265635.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.12365733632432 #Duplication Level Percentage of deduplicated Percentage of total 1 77.03400143727622 31.679198783524626 2 12.219693701451217 10.050369930666408 3 4.360681903974121 5.379815651152263 4 2.063706937622582 3.3946870778154525 5 1.0629364719123928 2.1855917620603384 6 0.6480682468161543 1.599056190757199 7 0.4045143535108127 1.1644576762982397 8 0.324997525489192 1.0692069498696688 9 0.26238238510706774 0.9711110966607487 >10 1.4073223651745106 11.245422966105657 >50 0.13019719243291986 3.664551165581827 >100 0.07056489055524663 5.585518205313544 >500 0.003975486791844881 1.1370490009646042 >1k 0.004969358489806101 3.803923455060234 >5k 9.938716979612202E-4 2.2597929282290785 >10k+ 9.938716979612202E-4 14.810247159940113 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36236 13.64127468142376 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCC 5529 2.081427522728556 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGC 3100 1.1670148888512433 No Hit CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT 1937 0.7291960773241478 Illumina PCR Primer Index 7 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 1834 0.6904210665010259 Illumina PCR Primer Index 7 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 1353 0.5093455305212039 RNA PCR Primer, Index 14 (95% over 24bp) CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCG 1083 0.40770229826641824 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 872 0.32826999454138195 No Hit GCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 807 0.3038003275170817 RNA PCR Primer, Index 14 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 561 0.2111920492404992 Illumina PCR Primer Index 7 (95% over 21bp) CGTTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATG 542 0.20403937734108832 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 475 0.17881679748527113 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTC 472 0.17768742823799574 No Hit TTCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCT 465 0.1750522333276865 RNA PCR Primer, Index 14 (95% over 22bp) TCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 458 0.17241703841737724 Illumina PCR Primer Index 7 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 389 0.1464415457300431 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 374 0.14079469949366613 No Hit CGTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC 365 0.13740659175183992 RNA PCR Primer, Index 14 (95% over 21bp) CGTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGT 346 0.1302539198524291 No Hit TGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 334 0.1257364428633275 RNA PCR Primer, Index 14 (95% over 23bp) TTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 330 0.12423061720029363 RNA PCR Primer, Index 14 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 317 0.11933668379543359 No Hit TTTCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC 311 0.1170779453008828 RNA PCR Primer, Index 14 (95% over 21bp) CGTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCT 277 0.10427842716509494 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8090048374649425 0.0 2 0.0 0.0 0.0 2.497788318557419 0.0 3 0.0 0.0 0.0 3.5571366725017413 0.0 4 0.0 0.0 0.0 4.9206618103789035 0.0 5 0.0 0.0 0.0 7.473789222052817 0.0 6 0.0 0.0 0.0 9.117397933254278 0.0 7 0.0 0.0 0.0 10.9127185800064 0.0 8 0.0 0.0 0.0 13.703389990023904 0.0 9 0.0 0.0 0.0 15.082349840947165 0.0 10 0.0 0.0 0.0 18.021345078773503 0.0 11 0.0 0.0 0.0 25.356598339827208 0.0 12 0.0 0.0 0.0 31.27298736988725 0.0 13 0.0 0.0 0.0 33.21587893161669 0.0 14 0.0 0.0 0.0 33.9164643213432 0.0 15 0.0 0.0 0.0 34.75859732339488 0.0 16 0.0 0.0 0.0 36.56859977036159 0.0 17 0.0 0.0 0.0 38.89208876842284 0.0 18 0.0 0.0 0.0 41.05784252828129 0.0 19 0.0 0.0 0.0 42.44131985619365 0.0 20 0.0 0.0 0.0 43.642592278878915 0.0 21 0.0 0.0 0.0 44.97825964198995 0.0 22 0.0 0.0 0.0 46.11816966890658 0.0 23 0.0 0.0 0.0 46.88764658271688 0.0 24 0.0 0.0 0.0 47.358970015246484 0.0 25 0.0 0.0 0.0 47.699286615092134 0.0 26 0.0 0.0 0.0 47.942477459672105 0.0 27 0.0 0.0 0.0 48.12882338547255 0.0 28 0.0 0.0 0.0 48.32985111148757 0.0 29 0.0 0.0 0.0 48.4890921753534 0.0 30 0.0 0.0 0.0 48.67167353699625 0.0 31 0.0 0.0 0.0 48.81962090838933 0.0 32 3.764564157584656E-4 0.0 0.0 48.950627741073276 0.0 33 3.764564157584656E-4 0.0 0.0 49.07749355318388 0.0 34 3.764564157584656E-4 0.0 0.0 49.20774747303631 0.0 35 3.764564157584656E-4 0.0 0.0 49.33498974156267 0.0 36 3.764564157584656E-4 0.0 0.0 49.449808948369004 0.0 37 3.764564157584656E-4 0.0 0.0 49.579686411805675 0.0 38 3.764564157584656E-4 0.0 0.0 49.71784591638903 0.0 39 3.764564157584656E-4 0.0 0.0 49.87068722118697 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGTA 20 7.023481E-4 45.000004 5 GGATGCC 20 7.023481E-4 45.000004 8 TTTGTCG 20 7.023481E-4 45.000004 1 GTTTAGG 40 6.7811925E-9 45.000004 2 TCCCTTG 35 1.2072087E-7 45.000004 1 TTCACGG 20 7.023481E-4 45.000004 2 CTTATTG 20 7.023481E-4 45.000004 2 CGGGCGA 20 7.023481E-4 45.000004 6 ACTAATC 20 7.023481E-4 45.000004 10 CCCTTGG 35 1.2072087E-7 45.000004 2 GCTAGCT 20 7.023481E-4 45.000004 4 ATTGGGC 35 1.2072087E-7 45.000004 4 ATTGGAT 20 7.023481E-4 45.000004 11 TGCTAGC 20 7.023481E-4 45.000004 3 GGCGATT 75 0.0 45.000004 8 GGGATCG 20 7.023481E-4 45.000004 8 GCTTTGT 20 7.023481E-4 45.000004 2 TGCCGGG 20 7.023481E-4 45.000004 3 CTTGTTG 45 3.8198777E-10 45.0 1 ATGGGAC 25 3.882681E-5 45.0 5 >>END_MODULE