##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933729.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 263881 Sequences flagged as poor quality 0 Sequence length 51 %GC 32 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.876936952641532 33.0 31.0 34.0 30.0 34.0 2 32.16126966321941 34.0 31.0 34.0 30.0 34.0 3 32.141787396591646 33.0 31.0 34.0 30.0 34.0 4 35.82971490937203 37.0 35.0 37.0 35.0 37.0 5 35.93554670476465 37.0 35.0 37.0 35.0 37.0 6 35.94890499884418 37.0 35.0 37.0 35.0 37.0 7 35.88269712484036 37.0 35.0 37.0 35.0 37.0 8 35.747416449081214 37.0 35.0 37.0 35.0 37.0 9 37.549501479833715 39.0 37.0 39.0 35.0 39.0 10 37.24686885376363 39.0 37.0 39.0 34.0 39.0 11 37.27177022976266 39.0 37.0 39.0 34.0 39.0 12 37.322478693047245 39.0 37.0 39.0 34.0 39.0 13 37.28653067102216 39.0 37.0 39.0 34.0 39.0 14 38.40479231168595 40.0 38.0 41.0 34.0 41.0 15 38.38745116169789 40.0 38.0 41.0 33.0 41.0 16 38.51766894926122 40.0 38.0 41.0 34.0 41.0 17 38.55390497989624 40.0 38.0 41.0 34.0 41.0 18 38.030093110151924 39.0 38.0 40.0 34.0 41.0 19 37.42867428878927 37.0 37.0 40.0 34.0 41.0 20 36.56452719218132 36.0 35.0 40.0 33.0 41.0 21 36.454147892421204 36.0 35.0 40.0 33.0 41.0 22 36.43758739734956 36.0 35.0 40.0 33.0 41.0 23 36.330618725865065 36.0 35.0 40.0 33.0 41.0 24 36.13622049332843 36.0 35.0 40.0 33.0 41.0 25 36.03234033522686 35.0 35.0 40.0 32.0 41.0 26 36.04874924681959 35.0 35.0 40.0 33.0 41.0 27 36.001712893311755 35.0 35.0 40.0 33.0 41.0 28 35.95158423683403 35.0 35.0 40.0 33.0 41.0 29 35.7772632360799 35.0 35.0 40.0 31.0 41.0 30 35.42085258127717 35.0 35.0 40.0 31.0 41.0 31 34.87569396811441 35.0 35.0 40.0 27.0 41.0 32 34.33630689591141 35.0 35.0 40.0 22.0 41.0 33 33.52332301302481 35.0 33.0 40.0 18.0 41.0 34 32.84729101375241 35.0 33.0 40.0 13.0 41.0 35 32.38814086652696 35.0 32.0 40.0 10.0 41.0 36 32.040116567695286 35.0 31.0 40.0 10.0 41.0 37 31.847143219860467 35.0 31.0 40.0 8.0 41.0 38 31.715364122464294 35.0 31.0 40.0 8.0 41.0 39 31.62207207036505 35.0 30.0 40.0 8.0 41.0 40 31.38116802649679 35.0 30.0 40.0 8.0 41.0 41 31.17645453821988 35.0 29.0 40.0 7.0 41.0 42 30.933204740015384 35.0 27.0 40.0 7.0 41.0 43 30.76501150139646 35.0 26.0 40.0 7.0 41.0 44 30.617475301366905 35.0 24.0 40.0 7.0 41.0 45 30.548607137308103 35.0 24.0 40.0 7.0 41.0 46 30.155877080956948 35.0 23.0 39.0 7.0 41.0 47 30.01806875068686 35.0 23.0 39.0 7.0 41.0 48 29.91775459392681 35.0 23.0 39.0 7.0 41.0 49 29.923624664147855 35.0 23.0 39.0 7.0 41.0 50 29.688086675433244 35.0 22.0 39.0 7.0 41.0 51 28.82978691152451 35.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 6.0 11 7.0 12 6.0 13 11.0 14 17.0 15 26.0 16 36.0 17 80.0 18 166.0 19 377.0 20 670.0 21 1040.0 22 1552.0 23 2406.0 24 4120.0 25 7578.0 26 10983.0 27 11292.0 28 9709.0 29 8650.0 30 8212.0 31 8636.0 32 8933.0 33 10333.0 34 13706.0 35 23782.0 36 32164.0 37 25586.0 38 42398.0 39 31391.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 15.014722545389777 3.4985466933958866 31.65934644783065 49.82738431338368 2 52.92688749853154 3.811187618661442 29.948347929559155 13.313576953247866 3 11.96865253656004 4.17233525718032 69.85307771306005 14.005934493199588 4 10.580905787078267 3.638003493999189 70.48404394405054 15.297046774872006 5 9.116988339440885 4.403121103830894 70.17140301878499 16.30848753794324 6 11.76742546829821 5.297842588136319 73.10909084018932 9.825641103376142 7 42.55895649933114 2.587908943804215 49.51739609899917 5.335738457865477 8 40.525085170967216 3.0172691478355773 49.34686468521796 7.110780995979248 9 36.54336613852456 4.595632122055017 51.999196607561736 6.861805131858678 10 18.241555852827602 15.833273331539596 54.87511416130756 11.050056654325244 11 11.353602570855802 13.21391081586018 57.48689750304115 17.945589110242874 12 10.579010993591808 11.593104467544082 61.89797673951516 15.92990779934895 13 14.872991992602728 12.253250518226018 62.168553249381354 10.705204239789905 14 12.113793717622716 14.597110060974455 60.20478928001637 13.084306941386458 15 7.550373084837483 13.982060095270215 61.957473254989935 16.510093564902363 16 6.966776691008447 14.824864238046695 59.469230448573406 18.73912862237145 17 6.834899064350976 14.952194360336668 57.99015465304437 20.222751922267992 18 7.451843823541672 13.711862544101319 62.06888711199367 16.767406520363345 19 7.641702130884755 15.533517001981952 62.85825807845203 13.966522788681262 20 7.872109018838038 19.878278466429943 59.492725887805484 12.75688662692653 21 7.745157855245356 20.597163115192075 59.37259598076405 12.285083048798512 22 6.192185113744452 19.983628984277004 56.16584748428268 17.658338417695855 23 6.972461071467821 19.48984580170607 53.77272331088635 19.76496981593976 24 8.481853562780191 18.860016446807464 53.143651873382325 19.514478117030023 25 7.452980699633546 19.90366869914848 51.49139195319103 21.15195864802695 26 8.243488542183787 20.037062160595116 53.48926220531224 18.230187091908853 27 9.67633137664326 18.228292298422392 56.420128770165334 15.675247554769006 28 7.448054236568756 15.287572807439718 56.46408797905116 20.800284976940365 29 10.533535949916818 13.209742270189972 54.60870619711158 21.648015582781632 30 15.08445094569143 15.843126257669176 50.89566888104865 18.17675391559074 31 12.626903793755517 21.740102546223486 47.68778350847541 17.94521015154558 32 11.210735141976876 20.760115355027455 45.53908769483214 22.490061808163528 33 13.228311246357261 17.929293886259337 44.27071293499721 24.571681932386188 34 13.717546924560692 17.231251965848244 44.90357395947416 24.14762715011691 35 16.254296444230544 17.080047445628903 41.70023609126841 24.96542001887214 36 15.233760672424312 19.313630007465488 42.236462647936 23.2161466721742 37 10.60553810240222 20.327723481417763 47.58660153629856 21.480136879881464 38 10.101144076307124 19.107097517441574 45.797537526385 24.9942208798663 39 12.589386882723652 19.7767175355558 41.224263967470186 26.40963161425036 40 13.3795157665766 22.562063960648928 42.567672549368844 21.490747723405626 41 12.327526422895168 24.00892826690819 44.19643703032806 19.46710827986858 42 13.785759490073177 23.13770222183484 46.15186390835263 16.92467437973935 43 13.196099757087476 19.985902736460755 47.83860906999746 18.97938843645431 44 12.781518942250484 16.765511726876888 44.50756212080446 25.945407210068172 45 17.20472485703783 14.659638246027566 42.69689746514527 25.43873943178933 46 17.390414618710707 16.515398986664444 47.467229546651716 18.62695684797314 47 10.311845112001244 21.615425134814554 49.91871335943095 18.154016393753245 48 10.469491930074541 19.6956203743354 50.547026879540404 19.28786081604966 49 16.530178375858814 15.079524482626638 49.8986285484745 18.491668593040046 50 15.153421428598495 13.25218564428663 45.91842535082101 25.67596757629386 51 12.523069110697623 13.228690205054553 43.477931340263225 30.770309343984596 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 941.0 1 1250.5 2 1560.0 3 24188.0 4 46816.0 5 27906.0 6 8996.0 7 8228.5 8 7461.0 9 7219.0 10 6977.0 11 6602.5 12 6228.0 13 5948.0 14 5668.0 15 5125.5 16 4583.0 17 4064.0 18 3545.0 19 3217.0 20 2889.0 21 2605.5 22 2322.0 23 2069.5 24 1817.0 25 1692.5 26 1497.0 27 1426.0 28 1352.0 29 1278.0 30 1294.5 31 1311.0 32 1400.0 33 1489.0 34 1614.5 35 1740.0 36 2106.0 37 2472.0 38 2865.0 39 3258.0 40 5371.0 41 7484.0 42 10037.0 43 12590.0 44 13306.0 45 14022.0 46 18542.5 47 23063.0 48 27748.0 49 32433.0 50 30642.5 51 28852.0 52 22321.0 53 15790.0 54 11266.5 55 6743.0 56 4870.5 57 2998.0 58 2362.0 59 1726.0 60 1501.0 61 1276.0 62 1069.0 63 862.0 64 712.0 65 562.0 66 478.5 67 395.0 68 330.5 69 266.0 70 220.5 71 175.0 72 155.0 73 135.0 74 107.0 75 62.5 76 46.0 77 31.5 78 17.0 79 14.0 80 11.0 81 10.5 82 10.0 83 5.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 263881.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.480514294541315 #Duplication Level Percentage of deduplicated Percentage of total 1 77.09397908717297 31.978979015485475 2 12.288584033257356 10.194735713024079 3 4.381663223695921 5.452609319531539 4 1.9622936305742338 3.2558779597248755 5 1.0383429315854316 2.1535499408132712 6 0.6482619940665627 1.6134144546891545 7 0.4434137034644949 1.2875119925468137 8 0.27439571843602967 0.910566041675733 9 0.24755194352024615 0.9241723738649751 >10 1.410746778697989 11.178724551286018 >50 0.13222643908174614 3.757720765866318 >100 0.06760449516961457 5.473686098040347 >500 0.0039767350099773275 1.0775816902116648 >1k 0.004970918762471659 3.8381373099119647 >5k 9.941837524943319E-4 2.295376841836252 >10k+ 9.941837524943319E-4 14.607355931491533 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35421 13.423096016765133 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCC 5566 2.1092841091249466 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGC 3135 1.1880355160091103 No Hit CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT 2012 0.7624648989506633 Illumina PCR Primer Index 7 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 1858 0.7041052595677597 Illumina PCR Primer Index 7 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 1268 0.4805196281657262 RNA PCR Primer, Index 14 (95% over 24bp) CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCG 1034 0.391843292999496 No Hit GCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 823 0.3118830078709721 RNA PCR Primer, Index 14 (95% over 24bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 722 0.27360817944452237 No Hit CGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 554 0.20994311829953655 Illumina PCR Primer Index 7 (95% over 21bp) CGTTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATG 514 0.19478477040787326 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 487 0.18455288558100053 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTC 473 0.17924746381891837 No Hit TCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 459 0.17394204205683622 Illumina PCR Primer Index 7 (95% over 21bp) TTCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCT 454 0.1720472485703783 RNA PCR Primer, Index 14 (95% over 22bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 390 0.14779389194371706 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGT 384 0.14552013975996755 No Hit CGTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC 359 0.13604617232767802 RNA PCR Primer, Index 14 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 347 0.131498667960179 No Hit TTTCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC 315 0.11937198964684839 RNA PCR Primer, Index 14 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 300 0.11368760918747466 RNA PCR Primer, Index 14 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 290 0.10989802221455884 RNA PCR Primer, Index 14 (95% over 23bp) TTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 287 0.10876114612268409 RNA PCR Primer, Index 14 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 275 0.1042136417551851 No Hit CGTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCT 272 0.10307676566331035 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8310564231604397 0.0 2 0.0 0.0 0.0 2.4738423759194483 0.0 3 0.0 0.0 0.0 3.5114312891038004 0.0 4 0.0 0.0 0.0 4.841576316597254 0.0 5 0.0 0.0 0.0 7.3373982969596145 0.0 6 0.0 0.0 0.0 8.920308775546554 0.0 7 0.0 0.0 0.0 10.69951985933053 0.0 8 0.0 0.0 0.0 13.504572136682823 0.0 9 0.0 0.0 0.0 14.882087001337725 0.0 10 0.0 0.0 0.0 17.845165055460605 0.0 11 0.0 0.0 0.0 25.161720624069183 0.0 12 0.0 0.0 0.0 31.049601903888494 0.0 13 0.0 0.0 0.0 32.91559452935225 0.0 14 0.0 0.0 0.0 33.594309556201466 0.0 15 0.0 0.0 0.0 34.46212497299919 0.0 16 0.0 0.0 0.0 36.29704298528503 0.0 17 0.0 0.0 0.0 38.63862877584972 0.0 18 0.0 0.0 0.0 40.761555398077164 0.0 19 0.0 0.0 0.0 42.14702839537519 0.0 20 0.0 0.0 0.0 43.39001292249158 0.0 21 0.0 0.0 0.0 44.69666251075295 0.0 22 0.0 0.0 0.0 45.81004316339562 0.0 23 0.0 0.0 0.0 46.59486662548649 0.0 24 0.0 0.0 0.0 47.07728104713867 0.0 25 0.0 0.0 0.0 47.398638022441936 0.0 26 0.0 0.0 0.0 47.62601324081688 0.0 27 0.0 0.0 0.0 47.818903217738296 0.0 28 0.0 0.0 0.0 48.00610881420034 0.0 29 0.0 0.0 0.0 48.19558816284613 0.0 30 0.0 0.0 0.0 48.37559354405963 0.0 31 0.0 0.0 0.0 48.523766394700644 0.0 32 3.789586972915822E-4 0.0 0.0 48.661707360514775 0.0 33 3.789586972915822E-4 0.0 0.0 48.80381687199912 0.0 34 3.789586972915822E-4 0.0 0.0 48.92659948992159 0.0 35 3.789586972915822E-4 0.0 0.0 49.062645662249274 0.0 36 3.789586972915822E-4 0.0 0.0 49.17784910622591 0.0 37 3.789586972915822E-4 0.0 0.0 49.30404235242401 0.0 38 3.789586972915822E-4 0.0 0.0 49.44312019433002 0.0 39 3.789586972915822E-4 0.0 0.0 49.5924299210629 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTTGCG 35 1.2071723E-7 45.000004 1 TTTGTAG 25 3.8826103E-5 45.000004 1 TGGAATG 50 2.1827873E-11 45.000004 6 GCTCTTG 25 3.8826103E-5 45.000004 1 CGTAGGG 25 3.8826103E-5 45.000004 3 CGGGAAG 25 3.8826103E-5 45.000004 6 GGGCATA 35 1.2071723E-7 45.000004 7 TCTTTAG 25 3.8826103E-5 45.000004 1 CGCTTGG 35 1.2071723E-7 45.000004 2 CGGGTCC 20 7.023398E-4 45.0 6 CCGGGAT 20 7.023398E-4 45.0 5 GGGCTAA 20 7.023398E-4 45.0 7 GGTCAAG 20 7.023398E-4 45.0 15 GGATACA 20 7.023398E-4 45.0 8 TATTGCG 20 7.023398E-4 45.0 1 GCCCTTG 20 7.023398E-4 45.0 1 GGAACAT 40 6.7811925E-9 45.0 8 CGGGAGT 20 7.023398E-4 45.0 6 GAGTTTG 20 7.023398E-4 45.0 1 CTTTAGG 20 7.023398E-4 45.0 2 >>END_MODULE