##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933723.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 92108 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.83600773005602 33.0 31.0 34.0 30.0 34.0 2 32.08258783167586 33.0 31.0 34.0 30.0 34.0 3 32.17556564033526 33.0 31.0 34.0 30.0 34.0 4 35.78404698831806 37.0 35.0 37.0 35.0 37.0 5 35.87255178703261 37.0 35.0 37.0 35.0 37.0 6 35.87407174186824 37.0 35.0 37.0 35.0 37.0 7 35.80763885873105 37.0 35.0 37.0 35.0 37.0 8 35.62385460546315 37.0 35.0 37.0 33.0 37.0 9 37.45162200894602 39.0 37.0 39.0 34.0 39.0 10 37.12833847222825 39.0 37.0 39.0 33.0 39.0 11 37.13529769401138 39.0 37.0 39.0 34.0 39.0 12 37.154318843097236 39.0 37.0 39.0 34.0 39.0 13 37.10350892430625 39.0 37.0 39.0 33.0 39.0 14 38.151756633517174 40.0 37.0 41.0 33.0 41.0 15 38.16628305901767 40.0 37.0 41.0 33.0 41.0 16 38.29468667216746 40.0 38.0 41.0 33.0 41.0 17 38.326421157771314 40.0 38.0 41.0 34.0 41.0 18 38.06381638945586 39.0 38.0 40.0 34.0 41.0 19 37.74908802709862 39.0 37.0 40.0 34.0 41.0 20 37.205335041473056 38.0 35.0 40.0 33.0 41.0 21 37.112552655578234 38.0 35.0 40.0 33.0 41.0 22 37.085432318582534 38.0 35.0 40.0 33.0 41.0 23 36.98405133104616 38.0 35.0 40.0 33.0 41.0 24 36.866157119902724 38.0 35.0 40.0 33.0 41.0 25 36.749522299908804 38.0 35.0 40.0 33.0 41.0 26 36.70542189603509 38.0 35.0 40.0 33.0 41.0 27 36.64824988057498 38.0 35.0 40.0 33.0 41.0 28 36.6136817648847 38.0 35.0 40.0 33.0 41.0 29 36.47651669778955 38.0 35.0 40.0 32.0 41.0 30 36.247861206409866 38.0 35.0 40.0 31.0 41.0 31 35.96683241412255 38.0 35.0 40.0 31.0 41.0 32 35.62855560863334 38.0 35.0 40.0 30.0 41.0 33 35.07136187953272 38.0 35.0 40.0 25.0 41.0 34 34.642148347591956 38.0 35.0 40.0 21.0 41.0 35 34.32173101142138 38.0 34.0 40.0 20.0 41.0 36 34.009597429104964 38.0 34.0 40.0 18.0 41.0 37 33.8253029052851 37.0 33.0 40.0 17.0 41.0 38 33.787705736743824 38.0 33.0 40.0 16.0 41.0 39 33.82811482173101 38.0 33.0 40.0 15.0 41.0 40 33.617155947366136 38.0 33.0 40.0 15.0 41.0 41 33.50702436270465 37.0 33.0 40.0 15.0 41.0 42 33.250597125114 37.0 33.0 40.0 15.0 41.0 43 32.887512485343294 37.0 32.0 40.0 12.0 41.0 44 32.6861944673644 37.0 32.0 40.0 10.0 41.0 45 32.73097885091414 37.0 32.0 40.0 10.0 41.0 46 32.51107395665957 36.0 31.0 40.0 10.0 41.0 47 32.44562904416554 36.0 31.0 40.0 10.0 41.0 48 32.33403178876971 36.0 31.0 40.0 10.0 41.0 49 32.326594866895384 36.0 31.0 40.0 10.0 41.0 50 32.15500282277327 36.0 31.0 39.0 10.0 41.0 51 31.148271594215487 35.0 28.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 0.0 12 2.0 13 4.0 14 4.0 15 4.0 16 15.0 17 29.0 18 52.0 19 81.0 20 154.0 21 207.0 22 336.0 23 542.0 24 898.0 25 1528.0 26 2362.0 27 2611.0 28 2462.0 29 2435.0 30 2374.0 31 2745.0 32 3055.0 33 3733.0 34 5413.0 35 7899.0 36 10424.0 37 10927.0 38 18150.0 39 13653.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.83975333304382 4.449124940287488 37.8881313240978 37.822990402570895 2 40.413427715290744 4.025708950362618 38.01407043904981 17.546792895296825 3 15.987753506752941 4.231988535197812 62.12272549615668 17.65753246189256 4 14.008555174360534 4.180961480001737 62.52225648152169 19.288226864116037 5 11.789421114344032 5.067963694793069 62.597168541277625 20.54544664958527 6 14.868415338515655 6.025535241238546 65.23646154514266 13.86958787510314 7 52.841229860598425 2.370043861553828 37.304034394406564 7.484691883441178 8 50.76649150996656 3.1506492378512183 36.92404568549963 9.158813566682591 9 45.916749902288615 4.984366178833543 40.421027489468884 8.677856429408955 10 24.00551526468928 17.419768098319363 43.953836800277934 14.620879836713424 11 15.220176314760932 16.552308159986104 46.31519520562817 21.91232031962479 12 13.865245147001346 14.933556260042558 52.60780822512703 18.59339036782907 13 16.92578277674035 16.617449081513005 51.67086463716507 14.785903504581576 14 13.69479306900595 19.497763495027577 49.968515221261995 16.838928214704477 15 9.981760541972468 17.89421114344031 51.49172710296608 20.63230121162114 16 9.68971207712685 19.197029573978373 47.8796630042993 23.233595344595475 17 9.573544100403874 19.03634863421201 46.309766795500934 25.080340469883183 18 10.729795457506405 17.572849263907585 51.041169062405004 20.656186216181005 19 10.71351022712468 19.250227993225344 50.98797064315803 19.048291136491944 20 12.001129109306467 22.884005732401093 48.369305597776524 16.745559560515915 21 11.874104312329004 23.70260997958918 48.62986928388413 15.793416424197682 22 9.751595952577409 23.42576106309984 44.643244886437664 22.17939809788509 23 11.199895774525558 21.887349633039477 42.97563729534894 23.93711729708603 24 13.16280887653624 22.053458982933076 41.80310070786468 22.980631432666 25 10.317236287836018 25.041255916967035 39.473227081252446 25.1682807139445 26 10.128327615407999 28.032309897077347 41.23746037260607 20.601902114908587 27 11.93055977765232 25.797976288704564 44.41633734311895 17.85512659052417 28 9.264124723151083 22.29339471055717 44.19377252790203 24.248708038389715 29 10.82642115777131 21.904720545446647 43.63247492074521 23.636383376036825 30 16.011638511312807 23.11634168584705 41.34168584704911 19.530333955791026 31 14.873843748642898 27.29513180179789 36.66022495331568 21.17079949624354 32 15.805358926477615 25.476614409171844 34.68645503105051 24.03157163330004 33 19.075433187128155 20.94823468102662 36.8154774829548 23.16085464889043 34 15.867242801928171 19.50210622312937 37.56459808051418 27.066052894428278 35 17.58913449428931 25.53306987449516 32.460806878881314 24.416988752334216 36 19.087375689408088 28.968167803013856 35.0610153298302 16.88344117774786 37 16.54687974985886 25.39084552916142 38.966213575368045 19.096061145611674 38 17.378512181352328 21.370564988926045 37.503799887089066 23.74712294263256 39 19.90163720849438 17.49142311199896 39.24631953793373 23.360620141572934 40 19.903808572545273 18.656359925305075 36.65262517913753 24.787206323012118 41 22.742867069092803 21.780952794545534 30.753029052850998 24.72315108351066 42 26.97159855821427 20.57910279237417 33.361922960003476 19.087375689408088 43 22.659269553133278 18.623789464541627 39.544882094932035 19.17205888739306 44 17.16680418638989 17.877925913058583 38.10852477526382 26.846745125287708 45 20.20128544751813 16.13866330829027 36.51908629000739 27.14096495418422 46 21.681070048204283 16.955096191427454 41.107178529552264 20.256655230815998 47 17.349198766665218 20.492248230338298 41.52625179137534 20.63230121162114 48 17.865983410778654 17.959352064967213 42.55547835150041 21.619186172753725 49 23.266165805358927 14.074781777912884 42.71833065531767 19.94072176141052 50 20.54436096755982 13.035784079558779 38.61553828114822 27.804316671733183 51 17.91483910192383 13.224692751986797 36.36491944239371 32.49554870369566 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 309.0 1 512.5 2 716.0 3 4876.0 4 9036.0 5 5446.5 6 1857.0 7 1749.0 8 1641.0 9 1655.5 10 1670.0 11 1552.0 12 1434.0 13 1342.0 14 1250.0 15 1161.5 16 1073.0 17 974.5 18 876.0 19 811.5 20 747.0 21 681.5 22 616.0 23 586.0 24 556.0 25 519.0 26 482.0 27 482.0 28 481.0 29 480.0 30 506.0 31 532.0 32 595.5 33 659.0 34 715.0 35 771.0 36 887.0 37 1003.0 38 1217.0 39 1431.0 40 2115.0 41 2799.0 42 3842.0 43 4885.0 44 5164.5 45 5444.0 46 7176.0 47 8908.0 48 11316.0 49 13724.0 50 12826.5 51 11929.0 52 9182.0 53 6435.0 54 4791.5 55 3148.0 56 2542.0 57 1936.0 58 1693.5 59 1451.0 60 1292.5 61 1134.0 62 997.5 63 861.0 64 766.5 65 672.0 66 586.5 67 501.0 68 375.0 69 249.0 70 207.0 71 165.0 72 137.0 73 109.0 74 92.0 75 54.5 76 34.0 77 25.5 78 17.0 79 13.0 80 9.0 81 5.0 82 1.0 83 1.0 84 1.0 85 0.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 92108.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.330698744951576 #Duplication Level Percentage of deduplicated Percentage of total 1 82.20312377364414 45.48356277413471 2 10.609449807707401 11.740565423198854 3 3.2454281453575073 5.387154210274895 4 1.3480103602542972 2.9834542059321665 5 0.671061926065458 1.8565162635167411 6 0.3688878423985559 1.2246493247057801 7 0.2727415430499961 1.0563686107612802 8 0.18836825994819872 0.8338037955443609 9 0.14520053371006986 0.7230642289486255 >10 0.8201867985244486 7.857080818169974 >50 0.07456243622949534 2.7608893907152474 >100 0.04120555686366847 4.241759673426847 >500 0.003924338748920807 1.8597733095930862 >1k 0.00588650812338121 4.886654796543189 >5k 0.0019621693744604034 7.104703174534242 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6544 7.104703174534242 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCC 1953 2.1203369957006992 No Hit CTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGCT 1394 1.513440743475051 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 1154 1.2528770573674382 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGC 972 1.0552829287358318 No Hit TCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 741 0.8044903808572544 No Hit GCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 491 0.5330698744951579 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCG 364 0.39518825726321277 No Hit CGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 314 0.3409041559907934 No Hit TCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 295 0.32027619750727404 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 207 0.22473617926781603 No Hit TTCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCT 199 0.21605072306422896 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTC 189 0.20519390280974512 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 183 0.19867981065705476 No Hit CGTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTC 168 0.18239458027532895 No Hit CGTTTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATG 161 0.17479480609719025 No Hit GGCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCT 146 0.15850957571546445 No Hit GCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 144 0.15633821166456768 No Hit TGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 137 0.14873843748642898 No Hit TTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 135 0.1465670734355322 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGT 123 0.13353888913015155 No Hit GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 122 0.13245320710470318 No Hit TTTCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTC 110 0.11942502279932254 No Hit CGTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCT 110 0.11942502279932254 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCT 104 0.1129109306466322 No Hit GTTTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTC 103 0.11182524862118383 No Hit GTCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 102 0.11073956659573543 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 99 0.10748252051939028 No Hit TGCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCT 97 0.10531115646849351 No Hit GTTCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTC 94 0.10205411039214835 No Hit TTGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCT 93 0.10096842836669996 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0010856820254483866 0.0 0.0 1.623094628045338 0.0 2 0.0010856820254483866 0.0 0.0 4.484952447127285 0.0 3 0.0010856820254483866 0.0 0.0 6.1232466235289005 0.0 4 0.0010856820254483866 0.0 0.0 7.933078559951362 0.0 5 0.0010856820254483866 0.0 0.0 11.193381682372866 0.0 6 0.0010856820254483866 0.0 0.0 13.311547314022668 0.0 7 0.0010856820254483866 0.0 0.0 15.405827941112607 0.0 8 0.0010856820254483866 0.0 0.0 18.221001433100273 0.0 9 0.0010856820254483866 0.0 0.0 19.56290441655448 0.0 10 0.0010856820254483866 0.0 0.0 22.45841837842533 0.0 11 0.0010856820254483866 0.0 0.0 29.53706518434881 0.0 12 0.0010856820254483866 0.0 0.0 34.79719459764624 0.0 13 0.0010856820254483866 0.0 0.0 36.69930950623181 0.0 14 0.0010856820254483866 0.0 0.0 37.47557215442741 0.0 15 0.0010856820254483866 0.0 0.0 38.556911451774006 0.0 16 0.0010856820254483866 0.0 0.0 40.84878620749555 0.0 17 0.0010856820254483866 0.0 0.0 43.55104876883658 0.0 18 0.0010856820254483866 0.0 0.0 45.979719459764624 0.0 19 0.0010856820254483866 0.0 0.0 47.36070699613497 0.0 20 0.0010856820254483866 0.0 0.0 48.495244712728535 0.0 21 0.0010856820254483866 0.0 0.0 49.66235289008555 0.0 22 0.0010856820254483866 0.0 0.0 50.473357363095495 0.0 23 0.0010856820254483866 0.0 0.0 51.125852260389976 0.0 24 0.0010856820254483866 0.0 0.0 51.490641420940634 0.0 25 0.0010856820254483866 0.0 0.0 51.745776696921006 0.0 26 0.0010856820254483866 0.0 0.0 51.94445650757806 0.0 27 0.0010856820254483866 0.0 0.0 52.10839449342077 0.0 28 0.0010856820254483866 0.0 0.0 52.246276110652715 0.0 29 0.0010856820254483866 0.0 0.0 52.39392886611369 0.0 30 0.0010856820254483866 0.0 0.0 52.528553437269295 0.0 31 0.0010856820254483866 0.0 0.0 52.64580709601772 0.0 32 0.0010856820254483866 0.0 0.0 52.76088939071525 0.0 33 0.0010856820254483866 0.0 0.0 52.8900855517436 0.0 34 0.0010856820254483866 0.0 0.0 53.01385330264472 0.0 35 0.0010856820254483866 0.0 0.0 53.13979241759674 0.0 36 0.0010856820254483866 0.0 0.0 53.240760845963436 0.0 37 0.0010856820254483866 0.0 0.0 53.346072002431924 0.0 38 0.0010856820254483866 0.0 0.0 53.45464020497677 0.0 39 0.0010856820254483866 0.0 0.0 53.57949363790333 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCTAG 35 1.1957309E-7 45.000004 14 AATCCTA 35 1.1957309E-7 45.000004 13 TCCTAGC 35 1.1957309E-7 45.000004 15 GGGTATG 35 1.1957309E-7 45.000004 7 GGGTAGA 35 1.1957309E-7 45.000004 7 TGGGCAT 35 1.1957309E-7 45.000004 6 TTCGGGC 35 1.1957309E-7 45.000004 4 ATGGGTA 20 6.9995027E-4 45.0 5 GCCCTAC 25 3.86283E-5 45.0 26 ACTAATC 40 6.697519E-9 45.0 10 GCCTTTG 20 6.9995027E-4 45.0 1 GGCATGG 20 6.9995027E-4 45.0 2 TATACTA 25 3.86283E-5 45.0 44 ACATGAT 20 6.9995027E-4 45.0 32 ATGATTT 20 6.9995027E-4 45.0 34 CACAATT 20 6.9995027E-4 45.0 43 GGGTACT 20 6.9995027E-4 45.0 7 GGACTAA 40 6.697519E-9 45.0 8 CAACTAG 20 6.9995027E-4 45.0 17 TATGCCA 20 6.9995027E-4 45.0 10 >>END_MODULE