SRR2933721.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933721.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478942
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15201	3.173870740089614	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCC	3117	0.6508094925899169	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGC	1573	0.32843225275711885	No Hit
CTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT	1452	0.3031682333142635	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1364	0.28479440099218695	No Hit
TCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1123	0.23447515565559085	No Hit
GCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1119	0.23363998145913284	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	577	0.12047387783907029	No Hit
TCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	538	0.11233092942360454	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	538	0.11233092942360454	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCG	536	0.11191334232537552	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	516	0.10773747134308538	No Hit
TTCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCT	484	0.10105607777142118	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGCAT	25	3.887385E-5	45.000004	21
TAACCCG	30	2.1628402E-6	45.000004	37
TCTCGCG	20	7.029159E-4	45.000004	1
AATTCCG	30	2.1628402E-6	45.000004	11
CCTGGCG	20	7.029159E-4	45.000004	4
GTTCAAG	35	1.2099372E-7	45.0	10
CGTTTTT	5450	0.0	43.96789	1
ATGGGAC	125	0.0	43.2	5
GGATACT	50	1.0786607E-9	40.500004	8
TGGGCAA	100	0.0	40.500004	6
CGCAGGG	45	1.9243089E-8	40.000004	3
GTTTTTT	6440	0.0	39.444878	2
AGCGTTC	40	3.4525874E-7	39.375004	7
CGTTCAA	40	3.4525874E-7	39.375004	9
CTACGGG	40	3.4525874E-7	39.375004	3
AAAGCGT	40	3.4525874E-7	39.375004	5
TTTGGGA	3225	0.0	39.139534	4
CGTAGGG	75	0.0	39.0	3
CGAACGA	35	6.24066E-6	38.571426	22
TCCGATA	35	6.24066E-6	38.571426	14