SRR2933720.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933720.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401466
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17355	4.3229065475034005	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCC	2908	0.7243452745687057	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGC	1438	0.35818724375165023	No Hit
CTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGCT	1241	0.3091170858802489	TruSeq Adapter, Index 21 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC	972	0.24211265711168564	TruSeq Adapter, Index 14 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC	776	0.19329158633607826	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC	589	0.14671229942261613	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCG	566	0.14098329621935607	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	432	0.10760562538297141	No Hit
TCCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTG	403	0.10038209960494787	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	25	3.886255E-5	45.000004	1
GCGATTC	50	2.1827873E-11	45.000004	9
TAGGGCG	30	2.1619599E-6	45.000004	5
ATTGCGG	30	2.1619599E-6	45.000004	2
GTGTTCG	20	7.027796E-4	45.0	1
TAGCGCG	20	7.027796E-4	45.0	1
TGACGTA	20	7.027796E-4	45.0	25
CTACGAA	20	7.027796E-4	45.0	11
TTGCGGC	40	6.7957444E-9	45.0	3
GCTACGA	20	7.027796E-4	45.0	10
AGCTACG	20	7.027796E-4	45.0	9
CAGACCG	20	7.027796E-4	45.0	42
CGTTTTT	7335	0.0	44.47853	1
AACACGT	120	0.0	43.125004	41
AGCGGGA	60	3.6379788E-12	41.250004	4
GCCGATT	50	1.0786607E-9	40.500004	9
GTTTTTT	8345	0.0	40.22768	2
GACACGA	140	0.0	40.178574	25
CACGACC	140	0.0	40.178574	27
TTGGGAC	1240	0.0	39.737904	5