##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933720.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 401466 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.24590127183871 33.0 31.0 34.0 30.0 34.0 2 32.4450787862484 34.0 31.0 34.0 30.0 34.0 3 32.53442881838063 34.0 31.0 34.0 31.0 34.0 4 36.056331046713794 37.0 35.0 37.0 35.0 37.0 5 36.08690399685154 37.0 35.0 37.0 35.0 37.0 6 36.06487722497048 37.0 35.0 37.0 35.0 37.0 7 36.13666661684925 37.0 35.0 37.0 35.0 37.0 8 35.99805712065281 37.0 35.0 37.0 35.0 37.0 9 37.830137545894296 39.0 38.0 39.0 35.0 39.0 10 37.29728793970099 39.0 37.0 39.0 34.0 39.0 11 37.20258751675111 39.0 37.0 39.0 34.0 39.0 12 37.28374756517364 39.0 37.0 39.0 34.0 39.0 13 37.286196091325294 39.0 37.0 39.0 34.0 39.0 14 38.39193356348981 40.0 38.0 41.0 34.0 41.0 15 38.46097054296005 40.0 38.0 41.0 34.0 41.0 16 38.525979784091305 40.0 38.0 41.0 34.0 41.0 17 38.518596842571974 40.0 38.0 41.0 34.0 41.0 18 38.252195702749425 39.0 38.0 41.0 34.0 41.0 19 37.93485874270797 39.0 37.0 41.0 34.0 41.0 20 37.51895303711896 39.0 35.0 41.0 34.0 41.0 21 37.40272899822152 39.0 35.0 41.0 33.0 41.0 22 37.44269502274165 39.0 35.0 41.0 33.0 41.0 23 37.40459715143997 39.0 35.0 41.0 33.0 41.0 24 37.313884612893744 39.0 35.0 41.0 33.0 41.0 25 37.23005684167526 39.0 35.0 41.0 33.0 41.0 26 37.15062296682658 39.0 35.0 40.0 33.0 41.0 27 37.08550661824413 39.0 35.0 40.0 33.0 41.0 28 36.97702420628397 39.0 35.0 40.0 33.0 41.0 29 36.8828792475577 39.0 35.0 40.0 33.0 41.0 30 36.76829669262154 39.0 35.0 40.0 32.0 41.0 31 36.40973332735524 38.0 35.0 40.0 31.0 41.0 32 35.89125106484733 38.0 35.0 40.0 30.0 41.0 33 35.43349374542302 38.0 35.0 40.0 25.0 41.0 34 34.97972680127333 38.0 35.0 40.0 21.0 41.0 35 34.52742199837595 38.0 34.0 40.0 18.0 41.0 36 34.36589898023743 38.0 34.0 40.0 18.0 41.0 37 34.2615364688417 38.0 34.0 40.0 17.0 41.0 38 34.11622403889744 38.0 34.0 40.0 15.0 41.0 39 34.109095166215816 38.0 34.0 40.0 15.0 41.0 40 33.955258975853496 38.0 34.0 40.0 15.0 41.0 41 33.63600404517444 38.0 33.0 40.0 15.0 41.0 42 33.501828299283126 38.0 33.0 40.0 13.0 41.0 43 33.51849222599174 38.0 33.0 40.0 12.0 41.0 44 33.43062675295044 38.0 33.0 40.0 11.0 41.0 45 33.46379020888444 38.0 33.0 40.0 12.0 41.0 46 33.25138866055905 38.0 33.0 40.0 10.0 41.0 47 33.06880034672924 37.0 33.0 40.0 10.0 41.0 48 33.000463301998174 37.0 33.0 40.0 10.0 41.0 49 33.027133057344834 37.0 33.0 40.0 10.0 41.0 50 32.935105338932814 37.0 32.0 40.0 10.0 41.0 51 31.971576671498955 36.0 30.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 1.0 11 1.0 12 3.0 13 6.0 14 6.0 15 16.0 16 27.0 17 59.0 18 118.0 19 243.0 20 419.0 21 677.0 22 1137.0 23 2084.0 24 3728.0 25 7177.0 26 11195.0 27 11696.0 28 10427.0 29 8970.0 30 8670.0 31 9281.0 32 10834.0 33 14102.0 34 20778.0 35 28367.0 36 38169.0 37 48200.0 38 82365.0 39 82690.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.585304857696542 4.289528876667015 45.1978498801891 29.927316385447334 2 35.799046494597306 4.009305893898861 44.06475268142259 16.12689493008125 3 17.540713285807517 4.183168686763014 61.13743131423334 17.138686713196137 4 13.884114719552839 4.314437586246407 61.885688949998254 19.915758744202495 5 13.085541490437546 5.272426556669805 61.78480867620172 19.857223276690927 6 17.119756093915797 5.948698021750285 63.1894108093836 13.742135074950307 7 67.37830849934988 1.649703835443101 26.647088420937266 4.324899244269751 8 67.89815326827178 1.996682159884025 25.180712687998486 4.924451883845705 9 62.52434826361386 4.976511086866633 27.45263608873479 5.046504560784724 10 26.731528946411405 28.24548031464682 32.49092077535831 12.532069963583467 11 18.12432435125266 20.544703661082135 42.671608554647214 18.65936343301799 12 16.56404278319957 19.320689672350834 45.586674836723404 18.528592707726183 13 18.96349877698236 19.857721450882515 46.84755371563221 14.331226056502915 14 16.57724439927665 22.174729615957517 45.393632337483126 15.854393647282707 15 13.679116039714447 21.11884941688711 47.236627759262305 17.96540678413614 16 14.640343142383166 21.705200440385987 44.69793207893072 18.956524338300127 17 14.90138641877519 21.211509816522444 42.956315105139666 20.9307886595627 18 16.186924920167588 19.30126087887891 45.65716648483309 18.854647716120418 19 15.450872552096568 22.310232996069406 44.8090249236548 17.429869528179225 20 16.317446558363596 24.98816836294979 42.51343824881808 16.18094682986853 21 15.52684411631371 25.565552251000085 43.36506702933748 15.542536603348728 22 14.285144943781042 23.017889435219917 42.30146513029746 20.39550049070158 23 13.402380276287406 24.780678812153457 40.75064887188454 21.066292039674593 24 13.609620739987943 24.467825419836302 41.75845526146673 20.16409857870903 25 13.718222713754091 26.973641603523085 38.60999437063163 20.698141312091188 26 13.743131423333482 27.350759466555076 39.8885584333418 19.01755067676964 27 14.8886829768897 25.55010885106086 41.3379962437666 18.223211928282844 28 12.437665954277573 25.06264540459217 40.960380206543014 21.539308434587237 29 14.648064842352776 24.63496286111402 39.6389731633563 21.077999133176906 30 20.355148381182964 24.23766894332272 37.83583167690415 17.57135099859017 31 19.184439030951562 28.015822012324833 34.205387255707834 18.594351701015775 32 16.996457981497812 28.89211041532782 33.91868800844903 20.192743594725332 33 20.677217996044497 25.37425336143036 32.80053603543015 21.147992607095 34 19.12391086667364 25.236757284552112 33.2117788305859 22.42755301818834 35 18.59136265586625 28.97331280855664 32.36687540165294 20.06844913392417 36 22.68784903329298 28.371518385118538 31.431304269850997 17.509328311737484 37 20.897161901630522 27.449647043585262 31.757110191149433 19.89608086363478 38 18.992392880094453 28.922000866823094 32.130491747744514 19.95511450533794 39 22.85623191004967 26.165852151863422 32.077436196340415 18.900479741746498 40 26.004941887980554 24.511913835791823 32.49266438502887 16.990479891198756 41 21.646415885778623 25.13836788171352 34.00686484036008 19.20835139214778 42 20.282664036306937 24.74829748970025 37.243751650202015 17.725286823790807 43 19.09078228293305 24.565467561387514 37.1662855634101 19.177464592269335 44 19.98973761165329 25.52320744471512 32.08167067696891 22.405384266662683 45 22.925976296871966 23.804506483737104 30.812821010994707 22.456696208396227 46 23.867525518972965 23.92581189938874 33.206548001574234 19.000114580064064 47 18.419990733960038 26.49937977313147 36.75828090049967 18.322348592408822 48 17.673476707865674 25.414854558044762 37.74441671274778 19.16725202134178 49 21.528348602372304 22.00136499728495 37.14312046350127 19.327165936841475 50 19.86071049603204 21.745303462808806 35.077939352273916 23.316046688885237 51 18.647656339515674 20.825175730946082 33.22772040471671 27.29944752482153 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 572.0 1 1047.5 2 1523.0 3 13230.0 4 24937.0 5 15584.0 6 6231.0 7 6181.0 8 6131.0 9 6387.0 10 6643.0 11 6586.5 12 6530.0 13 6348.5 14 6167.0 15 5863.0 16 5559.0 17 5177.5 18 4796.0 19 4491.5 20 4187.0 21 4004.0 22 3821.0 23 3662.5 24 3504.0 25 3673.5 26 4044.0 27 4245.0 28 4422.5 29 4600.0 30 5109.5 31 5619.0 32 6444.5 33 7270.0 34 8005.5 35 8741.0 36 9531.5 37 10322.0 38 11354.0 39 12386.0 40 14442.5 41 16499.0 42 18904.5 43 21310.0 44 24291.0 45 27272.0 46 32204.5 47 37137.0 48 42468.0 49 47799.0 50 44638.0 51 41477.0 52 33961.0 53 26445.0 54 21101.0 55 15757.0 56 12845.0 57 9933.0 58 8351.0 59 6769.0 60 5907.5 61 5046.0 62 4044.0 63 3042.0 64 2559.5 65 2077.0 66 1626.5 67 1176.0 68 894.0 69 612.0 70 522.0 71 432.0 72 377.0 73 322.0 74 324.0 75 289.0 76 252.0 77 176.5 78 101.0 79 72.0 80 43.0 81 23.5 82 4.0 83 2.5 84 1.0 85 1.5 86 2.0 87 1.5 88 1.0 89 1.0 90 1.0 91 2.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 401466.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.857675319737076 #Duplication Level Percentage of deduplicated Percentage of total 1 75.55012641406097 36.15653420289222 2 10.485611541367245 10.036339853512828 3 4.597583668484922 6.600889993850312 4 2.655840030299449 5.0840931948492685 5 1.6057512760992094 3.8423761607904727 6 1.140800983163906 3.2757649834017037 7 0.7944639478466705 2.661483836849774 8 0.6058467318868856 2.3195532950533093 9 0.4256785375991749 1.8334786718701621 >10 2.0148624613538573 15.741069119089499 >50 0.07916468350776952 2.583003466673899 >100 0.04010316204011803 3.423482834581166 >500 0.002083281144941197 0.7235799540436202 >1k 0.0015624608587058975 1.392573614619947 >5k 0.0 0.0 >10k+ 5.208202862352992E-4 4.325776817921815 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17355 4.3229065475034005 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCC 2908 0.7243452745687057 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGC 1438 0.35818724375165023 No Hit CTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGCT 1241 0.3091170858802489 TruSeq Adapter, Index 21 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC 972 0.24211265711168564 TruSeq Adapter, Index 14 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC 776 0.19329158633607826 TruSeq Adapter, Index 14 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC 589 0.14671229942261613 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCG 566 0.14098329621935607 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 432 0.10760562538297141 No Hit TCCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTG 403 0.10038209960494787 TruSeq Adapter, Index 21 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4505985562911928 0.0 2 0.0 0.0 0.0 1.3669899817170073 0.0 3 0.0 0.0 0.0 1.9767551922205118 0.0 4 0.0 0.0 0.0 2.8089551792679828 0.0 5 0.0 0.0 0.0 4.4591571889026715 0.0 6 0.0 0.0 0.0 5.938236363726941 0.0 7 0.0 0.0 0.0 7.324904226011667 0.0 8 0.0 0.0 0.0 9.478760343341653 0.0 9 0.0 0.0 0.0 10.51620809732331 0.0 10 2.490870957939153E-4 0.0 0.0 12.526590047476 0.0 11 2.490870957939153E-4 0.0 0.0 16.91824463341852 0.0 12 2.490870957939153E-4 0.0 0.0 20.56039614811715 0.0 13 2.490870957939153E-4 0.0 0.0 21.845934649509548 0.0 14 2.490870957939153E-4 0.0 0.0 22.298774989662885 0.0 15 2.490870957939153E-4 0.0 0.0 22.860964564869754 0.0 16 2.490870957939153E-4 0.0 0.0 24.274035659308634 0.0 17 2.490870957939153E-4 0.0 0.0 26.19648986464607 0.0 18 4.981741915878306E-4 0.0 0.0 28.054928686364473 0.0 19 4.981741915878306E-4 0.0 0.0 29.214678204380945 0.0 20 4.981741915878306E-4 0.0 0.0 30.202059452108024 0.0 21 4.981741915878306E-4 0.0 0.0 31.356079966921232 0.0 22 4.981741915878306E-4 0.0 0.0 32.41121290470426 0.0 23 4.981741915878306E-4 0.0 0.0 33.221991401513456 0.0 24 4.981741915878306E-4 0.0 0.0 33.718172896334934 0.0 25 4.981741915878306E-4 0.0 0.0 34.06166400143474 0.0 26 4.981741915878306E-4 0.0 0.0 34.34412876806504 0.0 27 4.981741915878306E-4 0.0 0.0 34.609157437989765 0.0 28 7.472612873817459E-4 0.0 0.0 34.85774635959209 0.0 29 7.472612873817459E-4 0.0 0.0 35.114555155355625 0.0 30 7.472612873817459E-4 0.0 0.0 35.38008199947193 0.0 31 7.472612873817459E-4 0.0 0.0 35.607249430835985 0.0 32 7.472612873817459E-4 0.0 0.0 35.8687908814196 0.0 33 7.472612873817459E-4 0.0 0.0 36.06556968709679 0.0 34 7.472612873817459E-4 0.0 0.0 36.27031927983939 0.0 35 7.472612873817459E-4 0.0 0.0 36.484534182222156 0.0 36 7.472612873817459E-4 0.0 0.0 36.684052945953084 0.0 37 7.472612873817459E-4 0.0 0.0 36.88880253869568 0.0 38 7.472612873817459E-4 0.0 0.0 37.11173548943123 0.0 39 7.472612873817459E-4 0.0 0.0 37.50155679434871 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGCG 25 3.886255E-5 45.000004 1 GCGATTC 50 2.1827873E-11 45.000004 9 TAGGGCG 30 2.1619599E-6 45.000004 5 ATTGCGG 30 2.1619599E-6 45.000004 2 GTGTTCG 20 7.027796E-4 45.0 1 TAGCGCG 20 7.027796E-4 45.0 1 TGACGTA 20 7.027796E-4 45.0 25 CTACGAA 20 7.027796E-4 45.0 11 TTGCGGC 40 6.7957444E-9 45.0 3 GCTACGA 20 7.027796E-4 45.0 10 AGCTACG 20 7.027796E-4 45.0 9 CAGACCG 20 7.027796E-4 45.0 42 CGTTTTT 7335 0.0 44.47853 1 AACACGT 120 0.0 43.125004 41 AGCGGGA 60 3.6379788E-12 41.250004 4 GCCGATT 50 1.0786607E-9 40.500004 9 GTTTTTT 8345 0.0 40.22768 2 GACACGA 140 0.0 40.178574 25 CACGACC 140 0.0 40.178574 27 TTGGGAC 1240 0.0 39.737904 5 >>END_MODULE