SRR2933718.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933718.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	127863
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6377	4.98736929369716	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCC	869	0.6796336704128637	No Hit
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT	505	0.3949539741754847	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	503	0.39338980002033425	TruSeq Adapter, Index 16 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	463	0.36210631691732553	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGC	428	0.33473326920219293	No Hit
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	395	0.3089243956422108	TruSeq Adapter, Index 16 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	269	0.21038142386773342	No Hit
TCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG	209	0.16345619921322038	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	207	0.16189202505806996	No Hit
TTCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCT	174	0.13608315149808778	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCG	150	0.11731306163628259	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTG	25	3.871318E-5	45.0	42
TCTCTCG	20	7.009762E-4	45.0	1
CCCTACA	20	7.009762E-4	45.0	27
TCTTCCG	20	7.009762E-4	45.0	1
TTGCTCG	25	3.871318E-5	45.0	1
CGTGAGG	25	3.871318E-5	45.0	45
GGCCGAT	35	1.2006421E-7	45.0	8
TCGGGAC	35	1.2006421E-7	45.0	5
CACGACC	25	3.871318E-5	45.0	27
GCTTGCG	20	7.009762E-4	45.0	1
GGAAGAT	20	7.009762E-4	45.0	8
GCCCTAC	20	7.009762E-4	45.0	26
GTCAAGC	25	3.871318E-5	45.0	16
CGGGACT	20	7.009762E-4	45.0	6
AAACACG	25	3.871318E-5	45.0	40
CGGGACC	35	1.2006421E-7	45.0	6
CTATTGG	25	3.871318E-5	45.0	2
CGAGACA	25	3.871318E-5	45.0	22
TTGCAGG	20	7.009762E-4	45.0	2
GGCTGCG	20	7.009762E-4	45.0	1