FastQCFastQC Report
Sat 14 Jan 2017
SRR2933717.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933717.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127102
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT62164.890560337366839No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCC8550.6726880772922534No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGC4840.3807965256250885No Hit
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT4810.3784362165819578TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC4480.35247281710751993TruSeq Adapter, Index 16 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC4410.34696542934021496TruSeq Adapter, Index 16 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC4120.3241491085899514TruSeq Adapter, Index 16 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2260.17780994791584712No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2180.17151579046749854No Hit
TCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG1950.15342008780349642No Hit
TTCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCT1750.13768469418262497No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCCGAT351.2005512E-745.0000048
GGATGTA207.009605E-445.08
GGATAAA207.009605E-445.08
GCGTTGG253.8711893E-545.02
ATACTAT207.009605E-445.045
GCCGATT207.009605E-445.09
GTTCGTG207.009605E-445.01
GTCGTTG207.009605E-445.01
GCGATGT207.009605E-445.09
CACAAAT253.8711893E-545.032
TACAGGG207.009605E-445.03
GGACAGT253.8711893E-545.08
TGCGTTG207.009605E-445.01
CGTTTTT20150.044.1066971
TGGGTCT700.041.7857176
GTCTTTG650.041.5384641
GGCGATT556.002665E-1140.9090928
CCGGGAC501.0659278E-940.55
GCACCGA451.9052095E-840.0000049
GGGCCGA451.9052095E-840.0000047