Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933717.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 127102 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6216 | 4.890560337366839 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCC | 855 | 0.6726880772922534 | No Hit |
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGC | 484 | 0.3807965256250885 | No Hit |
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT | 481 | 0.3784362165819578 | TruSeq Adapter, Index 13 (95% over 22bp) |
CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC | 448 | 0.35247281710751993 | TruSeq Adapter, Index 16 (95% over 21bp) |
TCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC | 441 | 0.34696542934021496 | TruSeq Adapter, Index 16 (95% over 21bp) |
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC | 412 | 0.3241491085899514 | TruSeq Adapter, Index 16 (95% over 21bp) |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 226 | 0.17780994791584712 | No Hit |
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 218 | 0.17151579046749854 | No Hit |
TCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG | 195 | 0.15342008780349642 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCT | 175 | 0.13768469418262497 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCCGAT | 35 | 1.2005512E-7 | 45.000004 | 8 |
GGATGTA | 20 | 7.009605E-4 | 45.0 | 8 |
GGATAAA | 20 | 7.009605E-4 | 45.0 | 8 |
GCGTTGG | 25 | 3.8711893E-5 | 45.0 | 2 |
ATACTAT | 20 | 7.009605E-4 | 45.0 | 45 |
GCCGATT | 20 | 7.009605E-4 | 45.0 | 9 |
GTTCGTG | 20 | 7.009605E-4 | 45.0 | 1 |
GTCGTTG | 20 | 7.009605E-4 | 45.0 | 1 |
GCGATGT | 20 | 7.009605E-4 | 45.0 | 9 |
CACAAAT | 25 | 3.8711893E-5 | 45.0 | 32 |
TACAGGG | 20 | 7.009605E-4 | 45.0 | 3 |
GGACAGT | 25 | 3.8711893E-5 | 45.0 | 8 |
TGCGTTG | 20 | 7.009605E-4 | 45.0 | 1 |
CGTTTTT | 2015 | 0.0 | 44.106697 | 1 |
TGGGTCT | 70 | 0.0 | 41.785717 | 6 |
GTCTTTG | 65 | 0.0 | 41.538464 | 1 |
GGCGATT | 55 | 6.002665E-11 | 40.909092 | 8 |
CCGGGAC | 50 | 1.0659278E-9 | 40.5 | 5 |
GCACCGA | 45 | 1.9052095E-8 | 40.000004 | 9 |
GGGCCGA | 45 | 1.9052095E-8 | 40.000004 | 7 |