##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933717.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 127102 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.947742757785086 33.0 31.0 34.0 30.0 34.0 2 32.178486569841546 34.0 31.0 34.0 30.0 34.0 3 32.3008921968183 34.0 31.0 34.0 30.0 34.0 4 35.8489874274205 37.0 35.0 37.0 35.0 37.0 5 35.93236927821749 37.0 35.0 37.0 35.0 37.0 6 35.9284511652059 37.0 35.0 37.0 35.0 37.0 7 35.899167597677454 37.0 35.0 37.0 35.0 37.0 8 35.78413400261208 37.0 35.0 37.0 35.0 37.0 9 37.58391685418011 39.0 37.0 39.0 35.0 39.0 10 37.1223584207959 39.0 37.0 39.0 33.0 39.0 11 37.10852700980315 39.0 37.0 39.0 34.0 39.0 12 37.13481298484682 39.0 37.0 39.0 34.0 39.0 13 37.08522289185064 39.0 37.0 39.0 33.0 39.0 14 38.063791285739015 40.0 37.0 41.0 33.0 41.0 15 38.11646551588488 40.0 37.0 41.0 33.0 41.0 16 38.29668297902472 40.0 38.0 41.0 33.0 41.0 17 38.35783071863543 40.0 38.0 41.0 34.0 41.0 18 38.16249940992274 39.0 38.0 41.0 34.0 41.0 19 37.926287548583026 39.0 37.0 41.0 34.0 41.0 20 37.44387185095435 39.0 35.0 40.0 34.0 41.0 21 37.358389325108966 39.0 35.0 40.0 33.0 41.0 22 37.36782269358468 39.0 35.0 40.0 33.0 41.0 23 37.27067237336942 39.0 35.0 40.0 33.0 41.0 24 37.145615332567544 39.0 35.0 40.0 33.0 41.0 25 37.062729146669604 38.0 35.0 40.0 33.0 41.0 26 37.05402747399726 38.0 35.0 40.0 33.0 41.0 27 37.00762379820931 38.0 35.0 40.0 33.0 41.0 28 36.95015027300908 38.0 35.0 40.0 33.0 41.0 29 36.79585687085962 38.0 35.0 40.0 33.0 41.0 30 36.56040030841371 38.0 35.0 40.0 32.0 41.0 31 36.26886280310302 38.0 35.0 40.0 31.0 41.0 32 36.0116127204922 38.0 35.0 40.0 30.0 41.0 33 35.58756746550015 38.0 35.0 40.0 27.0 41.0 34 35.25368601595569 38.0 35.0 40.0 25.0 41.0 35 34.99697880442479 38.0 35.0 40.0 23.0 41.0 36 34.825510220138156 38.0 35.0 40.0 22.0 41.0 37 34.73375713993485 38.0 35.0 40.0 22.0 41.0 38 34.62999795439883 38.0 34.0 40.0 21.0 41.0 39 34.631579361457725 38.0 35.0 40.0 21.0 41.0 40 34.42813645733348 38.0 34.0 40.0 20.0 41.0 41 34.29297729382701 38.0 34.0 40.0 18.0 41.0 42 34.14608739437617 38.0 34.0 40.0 18.0 41.0 43 34.11280703686803 38.0 34.0 40.0 18.0 41.0 44 33.986884549417006 38.0 33.0 40.0 17.0 41.0 45 33.971345848216394 38.0 33.0 40.0 18.0 41.0 46 33.680665921858036 37.0 33.0 40.0 17.0 41.0 47 33.607032147409164 37.0 33.0 40.0 17.0 41.0 48 33.57114758225677 37.0 33.0 40.0 17.0 41.0 49 33.61282277226165 37.0 33.0 40.0 17.0 41.0 50 33.44498906390143 37.0 33.0 40.0 15.0 41.0 51 32.499071611776365 36.0 31.0 39.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 5.0 12 5.0 13 0.0 14 5.0 15 9.0 16 8.0 17 15.0 18 35.0 19 75.0 20 138.0 21 248.0 22 318.0 23 561.0 24 935.0 25 1805.0 26 2729.0 27 3030.0 28 3032.0 29 2755.0 30 2882.0 31 3119.0 32 3876.0 33 5085.0 34 7582.0 35 9885.0 36 13175.0 37 15615.0 38 26514.0 39 23654.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.907601768658242 5.393306163553682 43.248729366965115 29.450362700822964 2 35.01125080643892 4.959796069298673 42.94975688816856 17.079196236093846 3 18.41041053641957 5.0298185709115515 57.84330695032336 18.71646394234552 4 15.373479567591383 5.08253213954147 58.01875658919607 21.525231703671068 5 13.33023870592123 6.0305896051989745 58.91803433462888 21.721137354250917 6 17.55991251121147 7.221758902298942 61.74647133798052 13.471857248509073 7 64.66617362433321 2.7615615804629354 27.241900206133657 5.330364589070196 8 64.19883243379333 3.0274897326556625 26.13019464681909 6.643483186731916 9 58.26580226904377 5.622256140737361 29.08844864754292 7.023492942675961 10 28.743056757564787 21.42452518449749 35.045081902723794 14.787336155213923 11 18.9941936397539 18.206637189029284 41.25190791647653 21.547261254740288 12 17.22789570581108 15.89510786612327 46.60430205661595 20.272694371449703 13 20.471747100753728 16.832937325927208 47.84425107394061 14.851064499378452 14 17.02569589778288 19.400953564853424 47.23922518921811 16.334125348145584 15 13.05722962659911 18.28216707840947 49.05902346147189 19.601579833519537 16 13.890418718824252 18.93675945303772 45.10078519614168 22.07203663199635 17 14.230303221035074 19.45052005475917 42.66809334235496 23.651083381850796 18 15.139808972321442 18.103570360812576 46.05120297084231 20.705417696023666 19 15.268052430331544 20.493776651822945 45.97803339050526 18.260137527340248 20 14.815659863731492 24.50000786769681 42.937955342952904 17.746376925618794 21 14.346745133829522 24.452014917153154 44.23455177731271 16.966688171704618 22 12.221680225330836 22.817894289625652 42.54299696306903 22.41742852197448 23 12.504130540825479 23.337162279114413 40.75939009614326 23.399317083916856 24 14.115434847602712 23.217573287595787 40.21337193749901 22.453619927302483 25 13.610328712372741 24.95554751302104 37.532060864502526 23.902062910103698 26 12.511211467954872 25.757265818004438 39.803464933675315 21.928057780365375 27 14.331796509889694 24.226212018693648 42.35889285770483 19.083098613711822 28 11.820427687998615 23.4669792764866 40.75545624773804 23.957136787776744 29 13.814888829444069 23.209705590785354 39.4564995043351 23.518906075435478 30 19.740051297383204 23.36312567858885 38.036380230051456 18.860442793976492 31 17.07604915736967 29.05776462998222 33.23079101823732 20.635395194410787 32 15.79597488631178 28.84455004641941 31.758744945004803 23.600730122264007 33 18.955641925382764 23.41583924721877 32.02624663655961 25.602272190838853 34 17.108306714292457 24.57711129643908 31.933407814196475 26.38117417507199 35 15.619738477758021 28.3260688266117 30.272537017513496 25.78165567811679 36 17.810892039464367 28.55108495539016 32.821670784094664 20.81635222105081 37 15.460811002187219 29.559723686488017 32.52033799625498 22.459127315069786 38 17.413573350537366 28.065648062186277 28.580195433588774 25.94058315368759 39 22.03269814794417 21.27425217541817 28.164781041997767 28.528268634639897 40 21.843086654812673 22.60310616670076 29.853975547198313 25.699831631288255 41 16.246793913549748 28.099479158471148 28.573901276140422 27.07982565183868 42 16.166543406083303 27.890985192994606 31.31579361457727 24.626677786344825 43 16.761341284952245 23.13181539236204 35.15995027615616 24.94689304652956 44 18.651948828499947 22.094852952746614 32.49830844518576 26.754889773567687 45 21.815549715976147 19.740051297383204 30.450346965429343 27.994052021211314 46 21.877704520778586 21.786439237777532 33.76815471039008 22.5677015310538 47 15.530833503800098 25.675441771175905 36.258280750892986 22.535443974131013 48 15.827445673553525 24.56609652090447 36.04663970669226 23.559818098849743 49 20.41982030180485 19.47963053295778 36.82632846060645 23.274220704630928 50 19.310475051533412 17.785715409670974 34.62179981432236 28.282009724473255 51 16.913187833393653 18.577205708800808 32.158423942974935 32.351182514830604 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 326.0 1 582.0 2 838.0 3 4829.0 4 8820.0 5 5391.5 6 1963.0 7 1840.0 8 1717.0 9 1745.5 10 1774.0 11 1743.5 12 1713.0 13 1622.0 14 1531.0 15 1435.5 16 1340.0 17 1199.5 18 1059.0 19 990.5 20 922.0 21 841.5 22 761.0 23 766.0 24 771.0 25 801.5 26 855.0 27 878.0 28 902.5 29 927.0 30 1092.0 31 1257.0 32 1360.0 33 1463.0 34 1600.5 35 1738.0 36 1909.0 37 2080.0 38 2377.5 39 2675.0 40 3412.0 41 4149.0 42 5105.0 43 6061.0 44 7087.5 45 8114.0 46 10213.0 47 12312.0 48 14526.5 49 16741.0 50 16062.5 51 15384.0 52 12450.5 53 9517.0 54 7491.5 55 5466.0 56 4573.5 57 3681.0 58 3143.0 59 2605.0 60 2433.0 61 2261.0 62 1955.0 63 1649.0 64 1469.0 65 1289.0 66 1126.0 67 963.0 68 759.5 69 556.0 70 466.0 71 376.0 72 307.0 73 238.0 74 195.5 75 127.0 76 101.0 77 74.0 78 47.0 79 37.5 80 28.0 81 24.0 82 20.0 83 12.0 84 4.0 85 2.0 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 127102.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.66390772765181 #Duplication Level Percentage of deduplicated Percentage of total 1 78.50944838592868 46.05671035860962 2 11.46144870780414 13.447467388396719 3 4.629642047664391 8.147786816887225 4 2.0492737684910747 4.808736290538308 5 1.09974115848343 3.2257556922786423 6 0.627657148988104 2.209249264370348 7 0.3714979279267197 1.5255464115434847 8 0.22799511822217453 1.070006766219257 9 0.14618510521304132 0.7718210571037435 >10 0.8020063570403552 8.181617913172099 >50 0.05230476241567533 2.0149171531525862 >100 0.020117216313721285 2.9771364730688736 >500 0.0013411477542480856 0.6726880772922534 >1k 0.0 0.0 >5k 0.0013411477542480856 4.890560337366839 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6216 4.890560337366839 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCC 855 0.6726880772922534 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGC 484 0.3807965256250885 No Hit CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT 481 0.3784362165819578 TruSeq Adapter, Index 13 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC 448 0.35247281710751993 TruSeq Adapter, Index 16 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC 441 0.34696542934021496 TruSeq Adapter, Index 16 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC 412 0.3241491085899514 TruSeq Adapter, Index 16 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 226 0.17780994791584712 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 218 0.17151579046749854 No Hit TCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG 195 0.15342008780349642 No Hit TTCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCT 175 0.13768469418262497 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.867696810435714E-4 0.0 0.0 0.4335100942550078 0.0 2 7.867696810435714E-4 0.0 0.0 1.649856021148369 0.0 3 7.867696810435714E-4 0.0 0.0 2.3980739878208053 0.0 4 7.867696810435714E-4 0.0 0.0 3.4625733662727574 0.0 5 7.867696810435714E-4 0.0 0.0 5.773315919497726 0.0 6 7.867696810435714E-4 0.0 0.0 7.622224669950119 0.0 7 7.867696810435714E-4 0.0 0.0 9.37357397995311 0.0 8 7.867696810435714E-4 0.0 0.0 12.03521581092351 0.0 9 7.867696810435714E-4 0.0 0.0 13.308209154852008 0.0 10 7.867696810435714E-4 0.0 0.0 15.77394533524256 0.0 11 7.867696810435714E-4 0.0 0.0 21.45127535365297 0.0 12 7.867696810435714E-4 0.0 0.0 26.294629510157197 0.0 13 7.867696810435714E-4 0.0 0.0 27.84613932117512 0.0 14 7.867696810435714E-4 0.0 0.0 28.394517788862487 0.0 15 7.867696810435714E-4 0.0 0.0 29.18128746990606 0.0 16 7.867696810435714E-4 0.0 0.0 31.171814762946294 0.0 17 7.867696810435714E-4 0.0 0.0 33.65171279759563 0.0 18 7.867696810435714E-4 0.0 0.0 35.9317713332599 0.0 19 7.867696810435714E-4 0.0 0.0 37.285015184654846 0.0 20 7.867696810435714E-4 0.0 0.0 38.45022108228037 0.0 21 7.867696810435714E-4 0.0 0.0 39.85539173262419 0.0 22 7.867696810435714E-4 0.0 0.0 41.07567150792277 0.0 23 7.867696810435714E-4 0.0 0.0 41.915941527277305 0.0 24 7.867696810435714E-4 0.0 0.0 42.424981510912495 0.0 25 7.867696810435714E-4 0.0 0.0 42.75070415886454 0.0 26 7.867696810435714E-4 0.0 0.0 43.00797784456578 0.0 27 7.867696810435714E-4 0.0 0.0 43.28413400261208 0.0 28 7.867696810435714E-4 0.0 0.0 43.50285597394219 0.0 29 7.867696810435714E-4 0.0 0.0 43.734166260169 0.0 30 7.867696810435714E-4 0.0 0.0 43.97885163097355 0.0 31 7.867696810435714E-4 0.0 0.0 44.16138219697566 0.0 32 7.867696810435714E-4 0.0 0.0 44.35020692042612 0.0 33 7.867696810435714E-4 0.0 0.0 44.56735535239414 0.0 34 7.867696810435714E-4 0.0 0.0 44.745952069991034 0.0 35 7.867696810435714E-4 0.0 0.0 44.91196047269123 0.0 36 7.867696810435714E-4 0.0 0.0 45.09370426901229 0.0 37 7.867696810435714E-4 0.0 0.0 45.262859750436654 0.0 38 7.867696810435714E-4 0.0 0.0 45.453258013249204 0.0 39 7.867696810435714E-4 0.0 0.0 45.83484130855533 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCCGAT 35 1.2005512E-7 45.000004 8 GGATGTA 20 7.009605E-4 45.0 8 GGATAAA 20 7.009605E-4 45.0 8 GCGTTGG 25 3.8711893E-5 45.0 2 ATACTAT 20 7.009605E-4 45.0 45 GCCGATT 20 7.009605E-4 45.0 9 GTTCGTG 20 7.009605E-4 45.0 1 GTCGTTG 20 7.009605E-4 45.0 1 GCGATGT 20 7.009605E-4 45.0 9 CACAAAT 25 3.8711893E-5 45.0 32 TACAGGG 20 7.009605E-4 45.0 3 GGACAGT 25 3.8711893E-5 45.0 8 TGCGTTG 20 7.009605E-4 45.0 1 CGTTTTT 2015 0.0 44.106697 1 TGGGTCT 70 0.0 41.785717 6 GTCTTTG 65 0.0 41.538464 1 GGCGATT 55 6.002665E-11 40.909092 8 CCGGGAC 50 1.0659278E-9 40.5 5 GCACCGA 45 1.9052095E-8 40.000004 9 GGGCCGA 45 1.9052095E-8 40.000004 7 >>END_MODULE