##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933713.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1421190 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.440067126844404 34.0 31.0 34.0 31.0 34.0 2 32.65307735067092 34.0 31.0 34.0 31.0 34.0 3 32.6966506941366 34.0 31.0 34.0 31.0 34.0 4 36.16302042654395 37.0 37.0 37.0 35.0 37.0 5 36.22573125338624 37.0 35.0 37.0 35.0 37.0 6 36.215589752249876 37.0 37.0 37.0 35.0 37.0 7 36.23869222271477 37.0 37.0 37.0 35.0 37.0 8 36.185013263532674 37.0 37.0 37.0 35.0 37.0 9 38.027345393648986 39.0 39.0 39.0 35.0 39.0 10 37.506093485037184 39.0 37.0 39.0 34.0 39.0 11 37.43170371308551 39.0 37.0 39.0 34.0 39.0 12 37.476015874021066 39.0 37.0 39.0 35.0 39.0 13 37.5376114383017 39.0 37.0 39.0 35.0 39.0 14 38.93468361021397 40.0 38.0 41.0 35.0 41.0 15 38.95316389786024 40.0 38.0 41.0 35.0 41.0 16 39.00597034879221 40.0 38.0 41.0 35.0 41.0 17 38.94563358875309 40.0 38.0 41.0 35.0 41.0 18 38.456251451248605 39.0 38.0 41.0 35.0 41.0 19 37.92434157290721 38.0 37.0 41.0 35.0 41.0 20 37.27043041394887 38.0 35.0 41.0 34.0 41.0 21 37.20004643995525 38.0 35.0 40.0 34.0 41.0 22 37.183658764837915 38.0 35.0 40.0 34.0 41.0 23 37.03050893969139 38.0 35.0 40.0 33.0 41.0 24 36.937578367424486 38.0 35.0 40.0 33.0 41.0 25 36.890037925963455 38.0 35.0 40.0 33.0 41.0 26 36.87598632132227 38.0 35.0 40.0 33.0 41.0 27 36.800859139172104 38.0 35.0 40.0 33.0 41.0 28 36.70189559453697 38.0 35.0 40.0 33.0 41.0 29 36.493828411401715 38.0 35.0 40.0 33.0 41.0 30 36.13556315482096 38.0 35.0 40.0 31.0 41.0 31 35.60193147995694 38.0 35.0 40.0 30.0 41.0 32 34.772955762424445 38.0 35.0 40.0 21.0 41.0 33 33.56091937038679 38.0 33.0 40.0 15.0 41.0 34 32.544201690132915 38.0 31.0 40.0 10.0 41.0 35 31.929979805655822 38.0 30.0 40.0 7.0 41.0 36 31.55774456617342 37.0 27.0 40.0 7.0 41.0 37 31.355089045096012 37.0 25.0 40.0 7.0 41.0 38 31.177359818180538 37.0 24.0 40.0 7.0 41.0 39 31.097002511979397 37.0 24.0 40.0 7.0 41.0 40 30.94226387745481 37.0 23.0 40.0 7.0 41.0 41 30.796948332031608 37.0 23.0 40.0 7.0 41.0 42 30.589615040916414 37.0 22.0 40.0 7.0 41.0 43 30.4541862805114 36.0 22.0 40.0 7.0 41.0 44 30.287022143415026 36.0 21.0 40.0 7.0 41.0 45 30.186363540413314 36.0 21.0 40.0 7.0 41.0 46 29.977551910722703 35.0 20.0 40.0 7.0 41.0 47 29.91533714703875 35.0 20.0 40.0 7.0 41.0 48 29.786848345400685 35.0 20.0 40.0 7.0 41.0 49 29.716078779051358 35.0 20.0 40.0 7.0 41.0 50 29.518564020292853 35.0 20.0 40.0 7.0 41.0 51 28.781027871009506 35.0 19.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 8.0 10 8.0 11 11.0 12 10.0 13 7.0 14 23.0 15 46.0 16 93.0 17 233.0 18 571.0 19 1223.0 20 2254.0 21 3627.0 22 5907.0 23 10470.0 24 21237.0 25 46432.0 26 77323.0 27 81198.0 28 65156.0 29 49829.0 30 40067.0 31 36482.0 32 36499.0 33 41250.0 34 58541.0 35 74115.0 36 94928.0 37 126657.0 38 236680.0 39 310156.0 40 146.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.612303773598182 3.371540751060731 35.75693608877068 40.25921938657041 2 43.99890232833049 3.6497583011420005 37.00469325002287 15.346646120504648 3 15.395970982064327 4.045201556442136 66.34996024458376 14.208867216909773 4 12.451114910743813 3.6912024430231005 67.44925027617701 16.40843237005608 5 12.726166100239938 4.395612127864677 67.17743581083458 15.7007859610608 6 14.79724737719798 5.338554310120392 67.80648611374974 12.057712198931881 7 60.12123642862671 1.2761136793813637 35.86705507356511 2.735594818426811 8 61.89102090501621 1.624835525158494 34.12562711530478 2.3585164545205073 9 57.466630077611015 3.8806915331517957 35.48153308143176 3.1711453078054306 10 23.51494170378345 23.389624188180328 41.88187364110358 11.213560466932641 11 18.444050408460516 19.208691307988378 48.61869278562331 13.728565497927791 12 14.447118260049677 19.30192303632871 51.39214320393472 14.85881549968688 13 15.4042035195857 18.482468916893588 52.962235872754526 13.15109169076619 14 15.137807049022298 19.72403408411261 51.87765182699005 13.260507039875034 15 14.296680950471083 18.83949366376065 52.287167796001945 14.576657589766324 16 15.389919715168274 19.49971502754734 51.185766857351936 13.92459839993245 17 15.357693200768372 19.223819475228506 51.10484875350938 14.313638570493742 18 17.066542826786 17.24083338610601 50.97045433756219 14.722169449545802 19 16.048733807583783 19.757386415609453 49.68315285077998 14.510726926026779 20 17.85595170244654 19.80009710172461 48.885441074029515 13.458510121799335 21 16.93397786362133 21.66205785292607 48.74182903060111 12.662135252851483 22 17.06175810412401 18.560502114425233 49.1883562366749 15.189383544775856 23 14.972945207889163 21.541736150690618 48.452071855276216 15.033246786144005 24 14.314060751905094 20.744165101077268 49.93350642771199 15.008267719305652 25 14.794292107318515 22.44133437471415 48.13015852911997 14.634214988847374 26 15.731394113383853 21.44484551678523 48.44644276979152 14.377317600039405 27 15.808794038798471 20.794545416165327 48.68103490736636 14.715625637669842 28 14.254603536472956 21.750153040761617 48.59885025928975 15.39639316347568 29 15.916591025830465 20.296582441475103 48.08568875379084 15.701137778903595 30 17.364180721789484 19.77448476276923 47.90098438632413 14.960350129117147 31 17.54198945953743 21.49916619171258 45.371414096637324 15.587430252112666 32 16.879938642968217 21.64749259423441 45.14772831218908 16.324840450608296 33 17.054721747268133 22.892364849175692 41.57002230525123 18.48289109830494 34 17.134514034013748 25.01678171110126 39.98860110189349 17.860103152991506 35 17.907809652474334 26.004686213666012 37.71022875196138 18.37727538189827 36 18.947923922909673 28.067816407376917 35.05970348792209 17.924556181791313 37 18.21192099578522 27.758427796424122 34.8980080073741 19.13164320041655 38 17.797057395562874 28.489997818729375 35.54450847529183 18.16843631041592 39 18.421111885110363 27.349896917372064 34.499750209331616 19.729240988185957 40 19.901139186174966 27.18376853200487 35.050204406166664 17.8648878756535 41 18.608138250339504 27.20445542116114 34.83496224994547 19.352444078553887 42 20.109978257657314 26.77608201577551 34.52810672746079 18.585832999106383 43 19.42850709616589 26.265383235176152 34.8251817139158 19.480927954742153 44 19.77568094343473 27.130151492763105 33.88660207291073 19.207565490891437 45 20.3179026027484 25.825329477409774 33.84642447526369 20.010343444578137 46 19.759567686234774 26.73147151330927 33.809061420358994 19.699899380096962 47 18.49633053989966 27.632406645135415 34.97477466067169 18.896488154293234 48 19.225086019462562 26.754410036659422 34.787326114031195 19.233177829846817 49 20.08619537148446 25.71809539892625 34.43944863107677 19.756260598512515 50 18.663232924521 25.957824077005892 34.60578810714964 20.77315489132347 51 18.509066345808794 25.10227344690013 33.88104335099459 22.507616856296483 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 389.0 1 1244.5 2 2100.0 3 49157.5 4 96215.0 5 66632.0 6 37049.0 7 36200.5 8 35352.0 9 35701.5 10 36051.0 11 36067.0 12 36083.0 13 35124.5 14 34166.0 15 32829.0 16 31492.0 17 30125.0 18 28758.0 19 27084.0 20 25410.0 21 24376.0 22 23342.0 23 22348.0 24 21354.0 25 20965.5 26 20855.5 27 21134.0 28 22011.5 29 22889.0 30 24700.5 31 26512.0 32 28708.0 33 30904.0 34 34150.5 35 37397.0 36 41103.5 37 44810.0 38 47895.5 39 50981.0 40 53587.5 41 56194.0 42 61255.5 43 66317.0 44 70714.5 45 75112.0 46 83228.0 47 91344.0 48 95316.0 49 99288.0 50 97445.0 51 95602.0 52 86731.5 53 77861.0 54 68345.0 55 58829.0 56 51185.5 57 43542.0 58 37450.5 59 31359.0 60 26833.5 61 22308.0 62 18709.5 63 15111.0 64 11945.0 65 8779.0 66 6948.0 67 5117.0 68 4150.0 69 3183.0 70 2422.5 71 1662.0 72 1670.5 73 1679.0 74 1886.0 75 1886.5 76 1680.0 77 1175.5 78 671.0 79 484.5 80 298.0 81 213.0 82 128.0 83 86.0 84 44.0 85 31.0 86 18.0 87 10.5 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1421190.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.60130307647627 #Duplication Level Percentage of deduplicated Percentage of total 1 76.6950470303327 34.206990370644704 2 8.394064665755385 7.487724444017927 3 3.8912182633318375 5.206602152987488 4 2.4362848629223137 4.346459182073183 5 1.7237831026790187 3.8441486300347756 6 1.2899511082061372 3.452010019856301 7 0.995673715203346 3.108584159594589 8 0.7800600535013146 2.783335589125154 9 0.6208170478792897 2.492032437675673 >10 3.0510874080594292 21.223917706331058 >50 0.07370268455239605 2.2855667399418524 >100 0.04290697402612048 3.4896048460297058 >500 0.0038139413299312845 1.1503469183267605 >1k 0.0014302279987242318 0.9543697631096628 >5k 0.0 0.0 >10k+ 1.5891422208047021E-4 3.968307040251304 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55988 3.9395154764669047 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCC 3195 0.22481160154518395 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGC 1853 0.1303836925393508 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.518178427937151E-4 0.0 0.0 0.1004088123333263 0.0 2 3.518178427937151E-4 0.0 0.0 0.3113587908724379 0.0 3 3.518178427937151E-4 0.0 0.0 0.5111209620107093 0.0 4 3.518178427937151E-4 0.0 0.0 0.7425467390004151 0.0 5 3.518178427937151E-4 0.0 0.0 1.2773802236154208 0.0 6 3.518178427937151E-4 0.0 0.0 2.0375882183240805 0.0 7 3.518178427937151E-4 0.0 0.0 2.7194111976583004 0.0 8 3.518178427937151E-4 0.0 0.0 3.7465082079102725 0.0 9 4.2218141135245816E-4 1.4072713711748606E-4 0.0 4.419395014037532 0.0 10 4.2218141135245816E-4 1.4072713711748606E-4 0.0 5.433967309086047 0.0 11 4.2218141135245816E-4 1.4072713711748606E-4 0.0 6.701918814514597 0.0 12 4.2218141135245816E-4 1.4072713711748606E-4 0.0 7.757161252190066 0.0 13 4.925449799112012E-4 1.4072713711748606E-4 0.0 8.225290073811383 0.0 14 4.925449799112012E-4 1.4072713711748606E-4 0.0 8.442924591363576 0.0 15 4.925449799112012E-4 1.4072713711748606E-4 0.0 8.662951470246766 0.0 16 4.925449799112012E-4 1.4072713711748606E-4 0.0 9.037285654979279 0.0 17 4.925449799112012E-4 1.4072713711748606E-4 0.0 9.534052449004003 0.0 18 4.925449799112012E-4 1.4072713711748606E-4 0.0 10.0257530660925 0.0 19 4.925449799112012E-4 1.4072713711748606E-4 0.0 10.340981853235668 0.0 20 5.629085484699443E-4 1.4072713711748606E-4 0.0 10.622295400333524 0.0 21 5.629085484699443E-4 1.4072713711748606E-4 0.0 10.945686361429507 0.0 22 5.629085484699443E-4 1.4072713711748606E-4 0.0 11.241213349376228 0.0 23 5.629085484699443E-4 1.4072713711748606E-4 7.036356855874303E-5 11.516545993146588 0.0 24 5.629085484699443E-4 1.4072713711748606E-4 7.036356855874303E-5 11.719896706281355 0.0 25 6.332721170286872E-4 1.4072713711748606E-4 7.036356855874303E-5 11.892428176387394 0.0 26 6.332721170286872E-4 1.4072713711748606E-4 7.036356855874303E-5 12.056516018266382 0.0 27 6.332721170286872E-4 1.4072713711748606E-4 7.036356855874303E-5 12.229962214763685 0.0 28 7.036356855874302E-4 1.4072713711748606E-4 7.036356855874303E-5 12.41093731309677 0.0 29 7.739992541461733E-4 1.4072713711748606E-4 7.036356855874303E-5 12.60134112961673 0.0 30 7.739992541461733E-4 1.4072713711748606E-4 7.036356855874303E-5 12.857112701327761 0.0 31 7.739992541461733E-4 1.4072713711748606E-4 7.036356855874303E-5 13.031543987784884 0.0 32 7.739992541461733E-4 1.4072713711748606E-4 7.036356855874303E-5 13.239609060013088 0.0 33 7.739992541461733E-4 1.4072713711748606E-4 7.036356855874303E-5 13.433319964255308 0.0 34 7.739992541461733E-4 1.4072713711748606E-4 7.036356855874303E-5 13.60838452282946 0.0 35 8.443628227049163E-4 1.4072713711748606E-4 7.036356855874303E-5 13.825667222538858 0.0 36 8.443628227049163E-4 1.4072713711748606E-4 7.036356855874303E-5 13.995102695628312 0.0 37 8.443628227049163E-4 1.4072713711748606E-4 7.036356855874303E-5 14.184169604345653 0.0 38 8.443628227049163E-4 1.4072713711748606E-4 7.036356855874303E-5 14.391249586614034 0.0 39 8.443628227049163E-4 1.4072713711748606E-4 7.036356855874303E-5 14.617609186667512 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 43130 0.0 44.41572 1 CGTATGG 55 6.184564E-11 40.909092 2 GTTTTTT 48755 0.0 39.771305 2 GGATCGA 85 0.0 39.705883 8 CGTGCGG 210 0.0 39.64286 2 AACACGC 70 0.0 38.571426 41 TCTTGCG 310 0.0 38.46774 1 TACGGGA 170 0.0 38.382355 4 TGGGCGA 2230 0.0 38.038116 6 CAGCGCG 30 1.140058E-4 37.499996 1 CCGTGCG 30 1.140058E-4 37.499996 1 GCGTTAG 60 1.5643309E-10 37.499996 1 TGCGGGA 1490 0.0 37.449665 4 TAGGGCG 175 0.0 37.285713 5 ACACGAC 835 0.0 37.185627 26 GACACGA 835 0.0 37.185627 25 GCTTTCG 280 0.0 36.964283 1 AACACGT 750 0.0 36.9 41 GGTCGTT 55 2.750312E-9 36.81818 8 TCAAGCG 935 0.0 36.81818 17 >>END_MODULE