SRR2933712.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933712.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1086752
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39389	3.624469980271488	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCC	3335	0.30687774211595653	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGC	1840	0.16931185771914842	No Hit
CCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC	1241	0.1141934866464474	TruSeq Adapter, Index 20 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGCG	20	7.033115E-4	45.000004	1
TATAGCG	20	7.033115E-4	45.000004	1
GACGATT	20	7.033115E-4	45.000004	9
TATCCGG	45	3.8562575E-10	45.000004	2
TCGTAAC	25	3.8906648E-5	45.0	34
ACACGCG	30	2.1653923E-6	44.999996	36
CGTTTTT	39790	0.0	44.632442	1
CTTTGCG	220	0.0	40.909092	1
GTTTTTT	44580	0.0	40.341522	2
TCAAGCG	75	0.0	39.0	17
CGGACAG	35	6.247974E-6	38.57143	6
CTGCGCG	70	0.0	38.57143	1
CTACGGG	70	0.0	38.57143	3
TACACGC	35	6.247974E-6	38.57143	35
TTGTCCG	95	0.0	37.894737	1
CGCGGGC	180	0.0	37.500004	4
CTATCCG	30	1.1398811E-4	37.499996	1
CGTAACC	30	1.1398811E-4	37.499996	35
GCTCGTA	30	1.1398811E-4	37.499996	32
TAGCTCG	30	1.1398811E-4	37.499996	30