##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933711.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1069410 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60469137187795 34.0 31.0 34.0 31.0 34.0 2 32.83791155870994 34.0 31.0 34.0 31.0 34.0 3 32.83249081269111 34.0 31.0 34.0 31.0 34.0 4 36.281551509710965 37.0 37.0 37.0 35.0 37.0 5 36.34280491111922 37.0 37.0 37.0 35.0 37.0 6 36.34920283146782 37.0 37.0 37.0 35.0 37.0 7 36.35772061230024 37.0 37.0 37.0 35.0 37.0 8 36.31668957649545 37.0 37.0 37.0 35.0 37.0 9 38.182455746626644 39.0 39.0 39.0 37.0 39.0 10 37.60582751236663 39.0 38.0 39.0 35.0 39.0 11 37.62194761597517 39.0 37.0 39.0 35.0 39.0 12 37.688240244620864 39.0 37.0 39.0 35.0 39.0 13 37.75204365023705 39.0 38.0 39.0 35.0 39.0 14 39.20851778083242 41.0 39.0 41.0 36.0 41.0 15 39.23828279144575 41.0 39.0 41.0 36.0 41.0 16 39.29887695084205 41.0 39.0 41.0 36.0 41.0 17 39.28904816674615 41.0 39.0 41.0 36.0 41.0 18 38.674060463246086 39.0 39.0 40.0 36.0 41.0 19 38.01877670865243 38.0 37.0 40.0 35.0 41.0 20 37.23290599489438 38.0 35.0 40.0 35.0 41.0 21 37.172965466939715 38.0 35.0 40.0 35.0 41.0 22 37.15172104244397 38.0 35.0 40.0 35.0 41.0 23 37.03030830083878 37.0 35.0 40.0 34.0 41.0 24 36.92878783628356 37.0 35.0 40.0 34.0 41.0 25 36.89040685985731 37.0 35.0 40.0 34.0 41.0 26 36.85957023031391 37.0 35.0 40.0 34.0 41.0 27 36.79166082232259 37.0 35.0 40.0 34.0 41.0 28 36.664046530329806 37.0 35.0 40.0 33.0 41.0 29 36.389441841763215 37.0 35.0 40.0 33.0 41.0 30 35.93877091106311 37.0 35.0 40.0 32.0 41.0 31 35.231597796916056 37.0 35.0 40.0 27.0 41.0 32 34.13270401436306 37.0 34.0 40.0 18.0 41.0 33 32.57475430377498 37.0 32.0 40.0 10.0 41.0 34 31.320136336858642 37.0 24.0 40.0 7.0 41.0 35 30.560883103767498 37.0 21.0 40.0 7.0 41.0 36 30.13178201064138 37.0 18.0 40.0 7.0 41.0 37 29.90602107704248 37.0 18.0 40.0 7.0 41.0 38 29.76210901338121 37.0 18.0 40.0 7.0 41.0 39 29.684254869507484 37.0 18.0 40.0 7.0 41.0 40 29.561854667526955 37.0 17.0 40.0 7.0 41.0 41 29.43248239683564 37.0 16.0 40.0 7.0 41.0 42 29.265514629562094 36.0 15.0 40.0 7.0 41.0 43 29.16861072928063 36.0 15.0 40.0 7.0 41.0 44 29.019703387849376 36.0 15.0 40.0 7.0 41.0 45 28.961215997606157 36.0 15.0 40.0 7.0 41.0 46 28.794323037936806 35.0 15.0 40.0 7.0 41.0 47 28.76011165034926 35.0 15.0 40.0 7.0 41.0 48 28.63452557952516 35.0 15.0 40.0 7.0 41.0 49 28.60704407102982 35.0 14.0 40.0 7.0 41.0 50 28.454209330378433 35.0 12.0 40.0 7.0 41.0 51 27.79507298416884 35.0 12.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 6.0 11 5.0 12 10.0 13 14.0 14 14.0 15 23.0 16 54.0 17 115.0 18 325.0 19 696.0 20 1380.0 21 2474.0 22 4581.0 23 9410.0 24 21308.0 25 48777.0 26 79398.0 27 75650.0 28 53735.0 29 35583.0 30 25671.0 31 22100.0 32 21221.0 33 23910.0 34 35611.0 35 47010.0 36 60231.0 37 84687.0 38 170869.0 39 244435.0 40 103.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 14.878951945465257 3.3122936946540618 36.6279537314968 45.18080062838388 2 49.97933439934169 2.924509776418773 35.04212603211116 12.05402979212837 3 13.024845475542591 3.040648581928353 70.489241731422 13.445264211107059 4 11.119308777737256 3.1435090376936814 70.61398341141377 15.123198773155291 5 10.49784460590419 3.9908921741895065 71.07760353839969 14.433659681506624 6 12.713645842099849 4.67949617078576 72.55813953488372 10.04871845223067 7 54.23887938208919 1.1358599601649508 41.97435969366286 2.650900964082999 8 56.197155440850565 1.2220757239973443 40.1658858622979 2.414882972854191 9 51.889266043893365 3.4882785835180146 41.59742287803555 3.0250324945530713 10 22.34643401501763 14.618060425842286 50.3435539222562 12.69195163688389 11 16.955236999841034 17.63392898888172 51.33765347247547 14.073180538801768 12 12.803134438615684 15.75953095632171 56.88248660476337 14.55484800029923 13 14.321261256206693 16.098222384305362 58.03686144696608 11.543654912521859 14 14.306486754378584 16.716881270981197 56.99684872967337 11.97978324496685 15 12.906368932401978 17.395386241011398 57.28495151532154 12.41329331126509 16 12.797056320775008 16.511440887966263 56.853311639128115 13.838191152130614 17 13.33090208619706 17.09045174441982 55.35931027388934 14.219335895493776 18 13.869890874407384 16.1196360610056 56.45271691867478 13.557756145912231 19 14.25533705501164 18.570894231398622 54.79413882421148 12.379629889378254 20 14.882224778148698 18.07594842015691 54.31565068589222 12.72617611580217 21 14.664441140441925 18.970647366304785 54.247014709045175 12.117896784208115 22 14.199605389887882 17.425589811204308 53.78302054403831 14.591784254869507 23 12.911605464695485 18.93380462123975 53.18932869526187 14.965261218802892 24 12.63939929493833 18.504595992182605 53.97303185868844 14.88297285419063 25 12.8136075032027 19.434454512301176 53.18558831505222 14.566349669443898 26 12.862232445928129 19.606512001945 53.90533097689381 13.625924575233073 27 13.261331014297603 19.184223076275703 53.759830186738476 13.794615722688212 28 13.071693737668433 18.11007938956995 53.7319643541766 15.086262518585015 29 13.686051187103168 17.524429358244266 53.09666077556784 15.692858679084729 30 14.710634836031083 17.829457364341085 51.87215380443422 15.587753995193612 31 13.832580581816142 19.416781215810587 50.16710148586604 16.583536716507233 32 14.054198109237802 18.99524036618322 48.764084869226956 18.186476655352017 33 15.644981812401232 19.48335998354233 44.8046118887985 20.067046315257947 34 15.760092013353159 20.328685910922843 42.0069010014868 21.904321074237195 35 16.42101719639801 21.27369297089049 40.381051233857924 21.924238598853574 36 16.83713449472139 22.361021497835253 38.427170121842884 22.374673885600473 37 17.009659531891415 24.068505063539707 37.96439158040415 20.957443824164727 38 18.6391561702247 24.26450098652528 37.09737144780767 19.998971395442346 39 18.851890294648452 23.850534406822455 36.983196341908155 20.314378956620942 40 18.65991528038825 23.81397219027314 38.12560196743999 19.400510561898617 41 17.655997232118644 23.952085729514405 38.762588717143096 19.629328321223852 42 18.00768648133083 24.467697141414423 38.46139460076117 19.06322177649358 43 18.00993070945662 24.25056807024434 38.05827512366632 19.681226096632724 44 18.701433500715346 24.664441140441927 35.5262247407449 21.10790061809783 45 19.652238150007946 23.947316744747106 35.20034411497929 21.20010099026566 46 19.48822247781487 24.16023788818133 35.92251802395713 20.42902161004666 47 18.1047493477712 24.845756071104628 36.99039657381173 20.059098007312443 48 18.012829504119093 24.091975949355252 37.44719050691503 20.448004039610627 49 19.397892295751863 23.03887190132877 36.930456980952115 20.632778821967253 50 18.62952469118486 22.698684321261258 36.537530039928555 22.134260947625325 51 18.17114109649246 22.709344404858754 35.573914588417914 23.545599910230873 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 335.0 1 1097.5 2 1860.0 3 35117.0 4 68374.0 5 48483.5 6 28593.0 7 28755.0 8 28917.0 9 29840.5 10 30764.0 11 31059.0 12 31354.0 13 30942.5 14 30531.0 15 29822.5 16 29114.0 17 28107.0 18 27100.0 19 25861.0 20 24622.0 21 23528.5 22 22435.0 23 21713.0 24 20991.0 25 20085.5 26 18703.5 27 18227.0 28 17991.5 29 17756.0 30 18359.5 31 18963.0 32 20140.5 33 21318.0 34 22994.5 35 24671.0 36 26811.5 37 28952.0 38 31476.5 39 34001.0 40 36817.5 41 39634.0 42 43786.5 43 47939.0 44 52159.0 45 56379.0 46 63905.0 47 71431.0 48 76009.5 49 80588.0 50 77606.0 51 74624.0 52 64476.0 53 54328.0 54 46063.5 55 37799.0 56 31741.5 57 25684.0 58 22279.0 59 18874.0 60 16274.0 61 13674.0 62 11232.0 63 8790.0 64 6925.0 65 5060.0 66 4007.0 67 2954.0 68 2329.5 69 1705.0 70 1261.5 71 818.0 72 611.0 73 404.0 74 352.0 75 226.5 76 153.0 77 112.5 78 72.0 79 81.0 80 90.0 81 58.0 82 26.0 83 17.5 84 9.0 85 10.5 86 12.0 87 7.5 88 3.0 89 1.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1069410.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.37263676743401 #Duplication Level Percentage of deduplicated Percentage of total 1 80.25336737325283 40.425737240563045 2 7.592253082142282 7.64883613506369 3 3.4376327322495834 5.194878748843499 4 2.0567973439821903 4.144252220505515 5 1.462112667128618 3.682523514716701 6 0.9985567586736269 3.0179962137799725 7 0.7703018938172443 2.7161496248965795 8 0.6094349585508746 2.455907664036752 9 0.4732334320727335 2.145421420200536 >10 2.239974490269232 17.905233802683476 >50 0.0660457415351909 2.292170704957208 >100 0.03674554052135471 3.1703258689055955 >500 0.0026113579609701354 0.9207869022638702 >1k 7.46102274562896E-4 0.6761206682337562 >5k 0.0 0.0 >10k+ 1.86525568640724E-4 3.6036592703498447 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38354 3.5864635640212827 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCC 3218 0.3009135878662066 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGC 1719 0.16074283950963617 No Hit CCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC 1220 0.11408159639427348 TruSeq Adapter, Index 20 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.805285157236233E-4 0.0 0.0 0.08658980185335839 0.0 2 2.805285157236233E-4 0.0 0.0 0.33036908201718707 0.0 3 2.805285157236233E-4 0.0 0.0 0.5642363546254476 0.0 4 2.805285157236233E-4 0.0 0.0 0.8769321401520465 0.0 5 2.805285157236233E-4 0.0 0.0 1.514947494412807 0.0 6 2.805285157236233E-4 0.0 0.0 2.4073087029296527 0.0 7 2.805285157236233E-4 0.0 0.0 3.180632311274441 0.0 8 2.805285157236233E-4 0.0 0.0 4.309572568051543 0.0 9 2.805285157236233E-4 0.0 0.0 4.9693756370335045 0.0 10 2.805285157236233E-4 0.0 0.0 6.005741483621811 0.0 11 2.805285157236233E-4 0.0 0.0 7.888274843137805 0.0 12 2.805285157236233E-4 0.0 0.0 9.336363041303148 0.0 13 3.740380209648311E-4 0.0 0.0 9.913877745672847 0.0 14 3.740380209648311E-4 0.0 0.0 10.145781318671043 0.0 15 3.740380209648311E-4 0.0 0.0 10.38105123385792 0.0 16 3.740380209648311E-4 0.0 0.0 10.947718835619641 0.0 17 3.740380209648311E-4 0.0 0.0 11.704397752031493 0.0 18 3.740380209648311E-4 0.0 0.0 12.498106432518865 0.0 19 3.740380209648311E-4 0.0 0.0 12.956396517706025 0.0 20 3.740380209648311E-4 0.0 0.0 13.368492907304027 0.0 21 3.740380209648311E-4 0.0 0.0 13.8463264790866 0.0 22 3.740380209648311E-4 0.0 0.0 14.27759231725905 0.0 23 3.740380209648311E-4 0.0 0.0 14.654996680412564 0.0 24 3.740380209648311E-4 0.0 0.0 14.919815599255664 0.0 25 3.740380209648311E-4 0.0 0.0 15.128154776933075 0.0 26 3.740380209648311E-4 0.0 0.0 15.319475224656586 0.0 27 3.740380209648311E-4 0.0 0.0 15.495553623025781 0.0 28 4.675475262060388E-4 0.0 0.0 15.66817216970105 0.0 29 4.675475262060388E-4 0.0 0.0 15.850048157395198 0.0 30 4.675475262060388E-4 0.0 0.0 16.03996596254009 0.0 31 5.610570314472466E-4 0.0 0.0 16.219691231613695 0.0 32 5.610570314472466E-4 0.0 0.0 16.40353091891791 0.0 33 5.610570314472466E-4 0.0 0.0 16.57886124124517 0.0 34 5.610570314472466E-4 0.0 0.0 16.742315856406805 0.0 35 5.610570314472466E-4 0.0 0.0 16.922134634985646 0.0 36 5.610570314472466E-4 0.0 0.0 17.0949402006714 0.0 37 5.610570314472466E-4 0.0 0.0 17.283268344227192 0.0 38 5.610570314472466E-4 0.0 0.0 17.468323655099542 0.0 39 5.610570314472466E-4 0.0 0.0 17.668433996315727 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCGGCG 20 7.033067E-4 45.0 4 CGTTTTT 38905 0.0 44.577816 1 CTTCGCG 55 6.184564E-11 40.909092 1 GTTTTTT 43610 0.0 40.201786 2 GCGATCA 40 3.457917E-7 39.375 9 TTGTACG 35 6.247881E-6 38.571426 1 ATGGGCG 95 0.0 37.894737 5 GGCACCG 220 0.0 37.84091 8 GCACCGA 220 0.0 37.84091 9 CTCGTAA 30 1.139869E-4 37.499996 33 TCGTAAC 30 1.139869E-4 37.499996 34 GCGATTC 210 0.0 36.42857 9 TTCTACG 25 0.002107043 36.0 1 GCGACTT 25 0.002107043 36.0 9 CTCGTAC 25 0.002107043 36.0 29 TTCGTAG 25 0.002107043 36.0 1 GTTCGCG 25 0.002107043 36.0 1 TCGCTTG 100 0.0 36.0 1 TCGTACG 25 0.002107043 36.0 30 GCGGACC 25 0.002107043 36.0 5 >>END_MODULE