##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933708.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 101668 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.945823661329033 33.0 31.0 34.0 30.0 34.0 2 32.124326238344416 33.0 31.0 34.0 30.0 34.0 3 32.255980249439354 33.0 31.0 34.0 30.0 34.0 4 35.86181492701735 37.0 35.0 37.0 35.0 37.0 5 35.86675256717945 37.0 35.0 37.0 35.0 37.0 6 35.80383208089074 37.0 35.0 37.0 35.0 37.0 7 35.824251485226426 37.0 35.0 37.0 35.0 37.0 8 35.582257937600815 37.0 35.0 37.0 33.0 37.0 9 37.432220561041824 39.0 37.0 39.0 34.0 39.0 10 37.00403273399693 39.0 37.0 39.0 33.0 39.0 11 36.98443954833379 39.0 37.0 39.0 33.0 39.0 12 37.02524884919542 39.0 37.0 39.0 33.0 39.0 13 36.95096785615927 39.0 37.0 39.0 33.0 39.0 14 37.99152142266987 40.0 37.0 41.0 33.0 41.0 15 38.01256049100996 40.0 37.0 41.0 33.0 41.0 16 38.069638430971395 40.0 37.0 41.0 33.0 41.0 17 38.04421253491758 40.0 37.0 41.0 33.0 41.0 18 37.82673014124405 39.0 37.0 40.0 33.0 41.0 19 37.62708030058622 39.0 37.0 40.0 33.0 41.0 20 37.22080694023685 39.0 35.0 40.0 33.0 41.0 21 37.154453712082464 39.0 35.0 40.0 33.0 41.0 22 37.16153558641854 39.0 35.0 40.0 33.0 41.0 23 37.090795530550416 39.0 35.0 40.0 33.0 41.0 24 36.96457095644647 38.0 35.0 40.0 32.0 41.0 25 36.876126214738164 38.0 35.0 40.0 32.0 41.0 26 36.82821536766731 38.0 35.0 40.0 32.0 41.0 27 36.69063028681591 38.0 35.0 40.0 32.0 41.0 28 36.59955935004131 38.0 35.0 40.0 32.0 41.0 29 36.515019475154425 38.0 35.0 40.0 31.0 41.0 30 36.307717275839 38.0 35.0 40.0 31.0 41.0 31 36.09531022543967 38.0 35.0 40.0 30.0 41.0 32 35.753413069992526 38.0 35.0 40.0 29.0 41.0 33 35.38526379981902 38.0 35.0 40.0 27.0 41.0 34 35.10819530235669 38.0 35.0 40.0 24.0 41.0 35 34.789206043199435 38.0 34.0 40.0 22.0 41.0 36 34.52473738049337 38.0 34.0 40.0 21.0 41.0 37 34.41227328166188 38.0 34.0 40.0 21.0 41.0 38 34.361391981744504 38.0 34.0 40.0 21.0 41.0 39 34.16610929692725 38.0 33.0 40.0 20.0 41.0 40 33.97391509619546 38.0 33.0 40.0 18.0 41.0 41 33.84500531140575 37.0 33.0 40.0 18.0 41.0 42 33.74202305543534 37.0 33.0 40.0 18.0 41.0 43 33.63660148719361 37.0 33.0 40.0 18.0 41.0 44 33.504062241806665 37.0 33.0 40.0 18.0 41.0 45 33.42089939804068 37.0 33.0 40.0 18.0 41.0 46 33.04859936263131 36.0 32.0 40.0 17.0 41.0 47 32.794950230160914 36.0 32.0 39.0 17.0 41.0 48 32.713823425266554 36.0 32.0 39.0 16.0 41.0 49 32.72767242396821 36.0 32.0 39.0 17.0 40.0 50 32.56596962662785 35.0 32.0 39.0 15.0 40.0 51 31.403716016839123 35.0 30.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 1.0 13 1.0 14 4.0 15 8.0 16 10.0 17 26.0 18 33.0 19 87.0 20 151.0 21 228.0 22 355.0 23 536.0 24 758.0 25 1385.0 26 2133.0 27 2571.0 28 2471.0 29 2518.0 30 2583.0 31 2915.0 32 3528.0 33 4431.0 34 6346.0 35 8831.0 36 11439.0 37 14266.0 38 20378.0 39 13671.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.548215761104775 5.098949521973482 42.028956997285285 29.323877719636464 2 33.319235157571704 6.8074517055514026 41.393555494354175 18.47975764252272 3 17.83845457764488 7.014006373686903 55.822874454105516 19.324664594562694 4 15.406027461934926 5.275996380375339 57.687768029271744 21.630208128417987 5 14.807018924341975 6.239918165007672 55.97434787740488 22.978715033245464 6 17.289609316599126 8.789392925994413 59.311681158279896 14.609316599126569 7 60.72117086989023 3.4543809261517877 29.069126962269348 6.755321241688633 8 58.95365306684502 5.09993311563127 27.362591966007006 8.583821851516701 9 53.87732619900066 6.107133021206279 30.29271747255774 9.722823307235315 10 28.238973915096192 21.357752685210684 35.13789983082189 15.265373568871226 11 19.38269662037219 19.393516150607862 39.715544714167685 21.508242514852263 12 17.26108510052327 17.209938230318294 45.00531140575206 20.523665263406382 13 19.400401306212377 19.092536491324704 45.76759649053783 15.73946571192509 14 16.599126568831885 21.86725419994492 43.4404138962112 18.093205335012 15 12.645080064523745 20.832513671951844 45.859070700712124 20.66333556281229 16 12.855569107290396 21.176771452177675 42.10272652161939 23.864932918912537 17 12.651965220128261 21.278081598929848 41.19683676279655 24.873116418145337 18 13.733918243695165 19.814494236141165 44.78892080103867 21.662666719124996 19 13.759491678797655 21.801353424873117 43.969587284101195 20.469567612228037 20 15.112916551914074 24.904591415194556 42.03092418460086 17.951567848290516 21 15.030294684659873 26.2806389424401 41.475193767950586 17.213872604949444 22 12.541802730455995 24.569185977888814 39.053586182476295 23.835425109178896 23 13.743754180273045 24.50918676476374 37.54376991777157 24.203289137191643 24 15.356847779045522 23.791163394578433 37.16508635952315 23.686902466852892 25 13.98965259472007 26.009167092890586 34.63626706534996 25.364913247039382 26 14.800133768737458 26.34063815556517 37.14344729905182 21.715780776645552 27 15.67749931148444 25.88129991737813 37.55852382263839 20.882676948499036 28 13.894244009914624 23.250186882794978 37.194594169256796 25.660974938033597 29 18.815163079828462 22.25479010111343 35.24117716488964 23.68886965416847 30 20.616123067238462 26.550143604674037 33.376283589723414 19.457449738364087 31 19.25974741314868 28.96093165991266 29.905181571389228 21.874139355549435 32 19.819412204430105 29.05240587008695 27.941928630444192 23.186253295038753 33 19.451548176417358 26.648502970452846 28.41110280520911 25.48884604792068 34 19.833182515639137 22.987567376165558 31.264508006452374 25.914742101742927 35 22.756422866585357 26.39375221308573 27.361608372349217 23.488216547979697 36 20.901365227997008 30.297635440846676 27.401935712318526 21.399063618837786 37 18.49549514104733 28.795687925404255 29.535350356060903 23.17346657748751 38 21.04595349569186 28.610772317740096 26.142935830349767 24.20033835621828 39 22.90396191525357 26.472439705708776 29.1222410197899 21.50135735924775 40 20.506944171223985 26.948499036078218 32.83038910965102 19.714167683046778 41 17.44304992721407 29.856001888499822 28.93732541212574 23.763622772160364 42 19.065979462564425 26.556045166620766 28.61470669237125 25.763268678443563 43 20.434158240547664 23.070189243419758 30.93008616280442 25.565566353228153 44 19.984655938938506 22.543966636503125 30.03403234055947 27.4373450839989 45 23.262973600346225 21.151198017075185 30.11763780147146 25.46819058110713 46 22.77117677145218 23.801982924814098 33.74513121139395 19.681709092339773 47 15.768973521658733 26.444899083290714 36.45001377031121 21.336113624739347 48 15.975528189794233 24.047881339261124 36.2936223787229 23.68296809222174 49 20.672187905732383 19.890230947790847 36.99787543769918 22.43970570877759 50 20.18530904512728 18.05779596333163 34.07561868041075 27.681276311130347 51 17.79812723767557 18.10795923987882 32.002203249793446 32.091710272652165 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 441.0 1 536.0 2 631.0 3 3151.5 4 5672.0 5 3522.0 6 1372.0 7 1389.0 8 1406.0 9 1434.5 10 1463.0 11 1403.5 12 1344.0 13 1257.5 14 1171.0 15 1105.5 16 1040.0 17 952.5 18 865.0 19 815.0 20 765.0 21 742.5 22 720.0 23 685.5 24 651.0 25 631.0 26 646.5 27 682.0 28 706.0 29 730.0 30 763.5 31 797.0 32 862.0 33 927.0 34 1028.5 35 1130.0 36 1330.5 37 1531.0 38 1690.0 39 1849.0 40 2469.5 41 3090.0 42 4103.0 43 5116.0 44 5559.5 45 6003.0 46 8572.0 47 11141.0 48 12853.0 49 14565.0 50 13642.5 51 12720.0 52 10168.5 53 7617.0 54 5908.0 55 4199.0 56 3499.5 57 2800.0 58 2471.0 59 2142.0 60 2012.5 61 1883.0 62 1646.0 63 1409.0 64 1245.5 65 1082.0 66 910.0 67 738.0 68 600.5 69 463.0 70 410.5 71 358.0 72 284.0 73 210.0 74 187.0 75 127.0 76 90.0 77 65.5 78 41.0 79 31.5 80 22.0 81 17.0 82 12.0 83 7.0 84 2.0 85 2.5 86 3.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 101668.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.91690600779006 #Duplication Level Percentage of deduplicated Percentage of total 1 81.46706925225648 49.62721800369832 2 11.30738055640773 13.776212770980054 3 3.658792566160205 6.686469685643467 4 1.3546897453699966 3.3009403155368453 5 0.6103369770558507 1.8589920132194986 6 0.33261750601456413 1.2157217610260849 7 0.2502704535546478 1.0671991187000827 8 0.17761128961942743 0.8655624188535231 9 0.11625466229635252 0.6373686902466853 >10 0.6297127541052427 7.018924341975843 >50 0.06135662732307494 2.6281622536097884 >100 0.022605073224290766 2.8514380139276865 >500 0.008073240437246701 3.3747098398709525 >1k 0.0032292961748986806 5.0910807727111775 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3725 3.6638863752606525 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCC 1451 1.4271943974505252 No Hit CTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGCT 884 0.8694967934846757 TruSeq Adapter, Index 23 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC 732 0.7199905575008853 TruSeq Adapter, Index 20 (95% over 21bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGC 692 0.6806468111893614 No Hit TCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC 598 0.5881890073572805 TruSeq Adapter, Index 20 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC 525 0.5163866703387496 TruSeq Adapter, Index 20 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCG 355 0.34917574851477357 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGC 352 0.3462249675414093 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 334 0.32852028170122355 No Hit GAATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC 289 0.2842585671007593 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCG 247 0.24294763347365939 No Hit TCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 209 0.20557107447771178 No Hit CGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 175 0.17212889011291654 No Hit TTCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT 172 0.16917810913955228 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 153 0.15048982964157848 No Hit TGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 135 0.13278514380139278 No Hit GCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 135 0.13278514380139278 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTC 124 0.12196561356572373 No Hit TTTCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC 115 0.11311327064563088 No Hit GTTCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC 104 0.10229374040996184 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.835936577880947E-4 0.0 0.0 1.0131014675217374 0.0 2 9.835936577880947E-4 0.0 0.0 3.1661879844198766 0.0 3 9.835936577880947E-4 0.0 0.0 4.308140221111854 0.0 4 9.835936577880947E-4 0.0 0.0 5.869103356021561 0.0 5 9.835936577880947E-4 0.0 0.0 8.917260101506866 0.0 6 9.835936577880947E-4 0.0 0.0 10.837234921509227 0.0 7 9.835936577880947E-4 0.0 0.0 12.831962859503482 0.0 8 9.835936577880947E-4 0.0 0.0 15.551599323287563 0.0 9 9.835936577880947E-4 0.0 0.0 16.88928669787937 0.0 10 9.835936577880947E-4 0.0 0.0 19.90596844631546 0.0 11 9.835936577880947E-4 0.0 0.0 25.843923358382185 0.0 12 9.835936577880947E-4 0.0 0.0 30.692056497619703 0.0 13 9.835936577880947E-4 0.0 0.0 32.42023055435339 0.0 14 9.835936577880947E-4 0.0 0.0 33.113664083093994 0.0 15 9.835936577880947E-4 0.0 0.0 34.097257740882085 0.0 16 9.835936577880947E-4 0.0 0.0 36.25722941338474 0.0 17 9.835936577880947E-4 0.0 0.0 38.82440886021167 0.0 18 9.835936577880947E-4 0.0 0.0 41.12011645748908 0.0 19 9.835936577880947E-4 0.0 0.0 42.594523350513434 0.0 20 9.835936577880947E-4 0.0 0.0 43.701066215525046 0.0 21 9.835936577880947E-4 0.0 0.0 44.922689538497856 0.0 22 9.835936577880947E-4 0.0 0.0 45.918086320179405 0.0 23 9.835936577880947E-4 0.0 0.0 46.69905968446315 0.0 24 9.835936577880947E-4 0.0 0.0 47.17315182751702 0.0 25 9.835936577880947E-4 0.0 0.0 47.52036038871621 0.0 26 9.835936577880947E-4 0.0 0.0 47.797733800212455 0.0 27 9.835936577880947E-4 0.0 0.0 47.99740331274344 0.0 28 9.835936577880947E-4 0.0 0.0 48.227564228665855 0.0 29 9.835936577880947E-4 0.0 0.0 48.42723374119684 0.0 30 9.835936577880947E-4 0.0 0.0 48.61510012983436 0.0 31 9.835936577880947E-4 0.0 0.0 48.781327458000554 0.0 32 9.835936577880947E-4 0.0 0.0 48.9426368178778 0.0 33 9.835936577880947E-4 0.0 0.0 49.099028209466105 0.0 34 9.835936577880947E-4 0.0 0.0 49.25738678836999 0.0 35 9.835936577880947E-4 0.0 0.0 49.422630522878386 0.0 36 9.835936577880947E-4 0.0 0.0 49.56820238423103 0.0 37 9.835936577880947E-4 0.0 0.0 49.69508596608569 0.0 38 9.835936577880947E-4 0.0 0.0 49.84262501475391 0.0 39 9.835936577880947E-4 0.0 0.0 49.970492190266356 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTGGGA 25 3.865679E-5 45.000004 4 TGTTCGG 30 2.1459618E-6 45.000004 2 CGGGATT 25 3.865679E-5 45.000004 6 TGGAATG 25 3.865679E-5 45.000004 6 TGGGTGA 30 2.1459618E-6 45.000004 6 TGGGTAC 25 3.865679E-5 45.000004 6 GGTGATA 20 7.0029486E-4 45.0 8 TTGTTCG 20 7.0029486E-4 45.0 1 GGGTCTA 20 7.0029486E-4 45.0 7 CCTATGT 20 7.0029486E-4 45.0 10 CGGGGTT 20 7.0029486E-4 45.0 6 GTTCTTG 45 3.765308E-10 45.0 1 TGTTCAT 20 7.0029486E-4 45.0 14 GGCCCAC 20 7.0029486E-4 45.0 8 GGCCTAT 20 7.0029486E-4 45.0 8 TGCTCGG 20 7.0029486E-4 45.0 2 ATGCTGG 20 7.0029486E-4 45.0 2 CCCTGGA 20 7.0029486E-4 45.0 3 TCGTTGA 20 7.0029486E-4 45.0 24 TGGGCGA 80 0.0 45.0 6 >>END_MODULE