##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933706.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2733179 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60897694589341 34.0 31.0 34.0 31.0 34.0 2 32.81248392439719 34.0 31.0 34.0 31.0 34.0 3 32.82791577134172 34.0 31.0 34.0 31.0 34.0 4 36.296115622138174 37.0 37.0 37.0 35.0 37.0 5 36.30762566227825 37.0 37.0 37.0 35.0 37.0 6 36.286492395851134 37.0 37.0 37.0 35.0 37.0 7 36.36122149335993 37.0 37.0 37.0 35.0 37.0 8 36.29134645041543 37.0 37.0 37.0 35.0 37.0 9 38.13133936708866 39.0 39.0 39.0 37.0 39.0 10 37.55840506604214 39.0 38.0 39.0 35.0 39.0 11 37.47647556197381 39.0 37.0 39.0 34.0 39.0 12 37.54704540024638 39.0 37.0 39.0 35.0 39.0 13 37.60583152438973 39.0 37.0 39.0 35.0 39.0 14 39.00271625092978 40.0 38.0 41.0 35.0 41.0 15 39.03903513088605 40.0 38.0 41.0 35.0 41.0 16 39.04549866657105 40.0 38.0 41.0 35.0 41.0 17 38.98276878316422 40.0 38.0 41.0 35.0 41.0 18 38.436867106032935 39.0 38.0 41.0 35.0 41.0 19 37.877533085099806 38.0 37.0 41.0 35.0 41.0 20 37.25750783245444 38.0 35.0 41.0 34.0 41.0 21 37.1680804660068 38.0 35.0 40.0 34.0 41.0 22 37.16311664914738 38.0 35.0 40.0 34.0 41.0 23 37.081232513494356 38.0 35.0 40.0 34.0 41.0 24 36.98091197100519 38.0 35.0 40.0 33.0 41.0 25 36.92119286735336 38.0 35.0 40.0 33.0 41.0 26 36.88635285138661 38.0 35.0 40.0 33.0 41.0 27 36.82253851650404 38.0 35.0 40.0 33.0 41.0 28 36.664140548423646 38.0 35.0 40.0 33.0 41.0 29 36.50805746714723 38.0 35.0 40.0 33.0 41.0 30 36.27527871390787 38.0 35.0 40.0 33.0 41.0 31 35.81025831092658 38.0 35.0 40.0 31.0 41.0 32 34.99140195354933 38.0 35.0 40.0 23.0 41.0 33 33.919080674921034 38.0 34.0 40.0 16.0 41.0 34 32.955785186407475 38.0 33.0 40.0 10.0 41.0 35 32.323957925917036 38.0 31.0 40.0 8.0 41.0 36 31.976020963134868 38.0 30.0 40.0 7.0 41.0 37 31.754744200800605 38.0 29.0 40.0 7.0 41.0 38 31.60464389635659 37.0 28.0 40.0 7.0 41.0 39 31.474439105525104 37.0 27.0 40.0 7.0 41.0 40 31.322039646872746 37.0 25.0 40.0 7.0 41.0 41 31.158872872943924 37.0 24.0 40.0 7.0 41.0 42 31.00548884650438 37.0 23.0 40.0 7.0 41.0 43 30.83665321590719 37.0 23.0 40.0 7.0 41.0 44 30.673680721240725 37.0 23.0 40.0 7.0 41.0 45 30.641132907870286 36.0 23.0 40.0 7.0 41.0 46 30.519650194882956 36.0 23.0 40.0 7.0 41.0 47 30.42814941868059 36.0 23.0 40.0 7.0 41.0 48 30.342436042425323 36.0 23.0 40.0 7.0 41.0 49 30.29404184650914 36.0 22.0 40.0 7.0 41.0 50 30.19504430555042 35.0 22.0 40.0 7.0 41.0 51 29.436006569639236 35.0 20.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 3.0 10 7.0 11 11.0 12 11.0 13 17.0 14 40.0 15 67.0 16 173.0 17 411.0 18 974.0 19 2149.0 20 3866.0 21 6378.0 22 10328.0 23 18375.0 24 37752.0 25 82525.0 26 137903.0 27 147958.0 28 120589.0 29 91481.0 30 74524.0 31 68601.0 32 68748.0 33 78502.0 34 111556.0 35 147285.0 36 189216.0 37 233745.0 38 456494.0 39 643264.0 40 222.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.88579489305311 3.122956820610725 39.79574700376375 40.19550128257242 2 44.46119335762495 3.0767834817990334 38.53805403890488 13.923969121671137 3 14.395032304872824 3.256464358902216 68.18887456694202 14.159628769282948 4 12.061961547341028 3.3826178234210054 68.37268982382786 16.182730805410113 5 12.128587260475806 4.322658706217193 67.84773335372472 15.701020679582273 6 14.583860039902252 4.9665243293615235 68.74401566820175 11.70559996253447 7 60.12222397435367 1.383151268175264 35.88861175942007 2.6060129980509874 8 62.77744706804786 1.5016945468994163 33.81926320961781 1.9015951754349054 9 58.265704514779316 4.056046091382965 35.05364998048061 2.62459941335712 10 24.495212351624243 22.61747218166099 42.01418933776383 10.87312612895094 11 17.91745070483858 19.44600042660945 49.00977945462043 13.626769413931541 12 14.257061099913324 18.463591297898894 52.50197663599786 14.77737096618992 13 15.366940840684054 18.101485486314655 53.552474975111394 12.979098697889894 14 15.296217335198317 18.84797885539147 52.51518469884336 13.340619110566854 15 14.274184017951258 19.300236098696793 52.87758320988124 13.547996673470708 16 15.749242914569445 19.077601576771958 51.67484456744326 13.498310941215339 17 15.94816878074945 18.95360677072376 51.355472876090445 13.742751572436346 18 16.69630858425299 17.784455390590956 51.50965231329525 14.009583711860804 19 16.34528876447536 19.78399512070011 50.058265484990194 13.812450629834345 20 17.364212150027495 19.9894335497236 49.428193323598634 13.218160976650267 21 17.223533475121826 20.59630927941419 49.53630918428687 12.643848061177113 22 16.96851907613808 18.72577683349682 49.7889454002098 14.51675869015531 23 14.898951001745587 20.850408992605317 49.560456889212155 14.69018311643694 24 14.23964548242175 20.68583872479629 50.37214906158726 14.702366731194699 25 14.792005938871913 21.810133913658785 49.09806492732455 14.299795220144748 26 15.1023405345936 21.5247519463599 48.87850374966294 14.494403769383565 27 14.889987080977866 20.82417580407284 49.67654881001208 14.609288304937218 28 14.366055058962477 20.704425140102423 49.77584709965941 15.153672701275694 29 15.176137384342555 19.97929883114132 49.41004595747297 15.434517827043162 30 15.867383731544843 19.669622809190322 49.39621590828848 15.066777550976354 31 15.890653338109212 20.627664708385364 47.755964757522285 15.725717195983139 32 15.552000070247868 21.000966274071327 47.35013696505059 16.096896690630214 33 16.521969472178736 22.07850272521485 44.27701222642205 17.122515576184362 34 16.339544537697677 23.492277673727187 42.70430147458326 17.463876313991875 35 17.00141117724086 24.425659643953068 40.37906042743633 18.19386875136974 36 17.53759998887742 25.7050855432447 38.522138506113215 18.23517596176467 37 17.99168660376799 25.801090964038583 38.06688109340808 18.140341338785348 38 18.376952259621486 26.455127893196895 37.88226091302472 17.285658934156892 39 18.88935924064981 26.210906786566117 36.7995656340108 18.100168338773276 40 19.117079415581635 26.153903567969756 36.89476613130717 17.834250885141444 41 18.4768359481761 25.91513398866302 36.91927971054951 18.688750352611372 42 19.10573731175309 26.107035067955664 36.879253060264254 17.907974560026986 43 18.79456120510219 26.03411631656763 37.101668057598864 18.069654420731318 44 18.72087411764835 26.468701830359446 36.37588317486707 18.434540877125137 45 18.899311022073565 25.796590709938865 36.1331621529362 19.170936115051372 46 18.66339526243982 25.998772857540615 36.196787696671166 19.141044183348402 47 17.962782532721057 26.532656660979757 36.66580198369737 18.83875882260181 48 18.300886989106825 25.946050368453733 36.82671350833589 18.92634913410355 49 19.039770172389 25.31714900487674 36.6418006284989 19.001280194235356 50 18.12523072949119 25.412422677036524 36.62658025690963 19.835766336562664 51 17.773369398784347 24.937261701483877 36.27267003002731 21.016698869704474 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1116.0 1 2862.5 2 4609.0 3 114582.0 4 224555.0 5 148070.0 6 71585.0 7 69951.5 8 68318.0 9 68480.0 10 68642.0 11 68087.5 12 67533.0 13 65856.0 14 64179.0 15 61291.0 16 58403.0 17 55917.0 18 53431.0 19 50309.5 20 47188.0 21 45150.5 22 43113.0 23 41425.5 24 39738.0 25 40037.5 26 41551.5 27 42766.0 28 45241.5 29 47717.0 30 51780.0 31 55843.0 32 61274.0 33 66705.0 34 73365.5 35 80026.0 36 85970.0 37 91914.0 38 99680.5 39 107447.0 40 112242.0 41 117037.0 42 125102.5 43 133168.0 44 140369.5 45 147571.0 46 155420.5 47 163270.0 48 168498.0 49 173726.0 50 167675.0 51 161624.0 52 146753.5 53 131883.0 54 117624.5 55 103366.0 56 91229.5 57 79093.0 58 69306.5 59 59520.0 60 51149.5 61 42779.0 62 36047.5 63 29316.0 64 23527.5 65 17739.0 66 13834.5 67 9930.0 68 7861.5 69 5793.0 70 4709.0 71 3625.0 72 3224.0 73 2823.0 74 2701.5 75 2214.0 76 1848.0 77 1372.5 78 897.0 79 574.0 80 251.0 81 187.0 82 123.0 83 72.0 84 21.0 85 18.5 86 16.0 87 11.5 88 7.0 89 5.5 90 4.0 91 3.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2733179.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.2988168222172 #Duplication Level Percentage of deduplicated Percentage of total 1 75.40552763555584 30.387535455679014 2 8.340045524769204 6.7218793378325286 3 3.8042283915913404 4.599177093078522 4 2.4539630280480837 3.9556722622321265 5 1.8010398390498066 3.628988728169185 6 1.323623645127123 3.200428008992002 7 1.056583381185289 2.980534209504939 8 0.8532588084089406 2.750825633761217 9 0.7409203612365868 2.687239252559179 >10 4.1091855995775335 26.16302578431453 >50 0.06161179864285929 1.7217841020241103 >100 0.04454347036141026 3.567035490176896 >500 0.003554535689817293 0.9629641666583776 >1k 0.00173169687452233 1.19648793550257 >5k 9.114194076433316E-5 0.2149755613487396 >10k+ 9.114194076433316E-5 5.261446978166231 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 143250 5.241149591739144 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCC 5853 0.2141462377692789 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGC 3448 0.12615346451878928 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 3112 0.11386008746591422 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.658743170498529E-4 0.0 0.0 0.060881486357095525 0.0 2 3.658743170498529E-4 0.0 0.0 0.17426593721084496 0.0 3 3.658743170498529E-4 0.0 0.0 0.28746745090606945 0.0 4 3.658743170498529E-4 0.0 0.0 0.4280729509483279 0.0 5 3.658743170498529E-4 0.0 0.0 0.7332853062313153 0.0 6 3.658743170498529E-4 0.0 0.0 1.28125527087688 0.0 7 3.658743170498529E-4 0.0 0.0 1.808297224587193 0.0 8 3.658743170498529E-4 0.0 0.0 2.557754175632112 0.0 9 3.658743170498529E-4 0.0 0.0 3.0688440091190516 0.0 10 4.0246174875483825E-4 0.0 0.0 3.7009284792543773 0.0 11 4.0246174875483825E-4 0.0 0.0 4.573246025964637 0.0 12 4.0246174875483825E-4 0.0 0.0 5.2811396545926925 0.0 13 4.390491804598235E-4 0.0 0.0 5.61196321206917 0.0 14 4.756366121648088E-4 0.0 0.0 5.787802408843328 0.0 15 5.122240438697941E-4 0.0 0.0 5.930493392492771 0.0 16 5.122240438697941E-4 0.0 0.0 6.153420613871247 0.0 17 5.122240438697941E-4 0.0 0.0 6.44333942270155 0.0 18 5.122240438697941E-4 0.0 0.0 6.752320283450151 0.0 19 5.122240438697941E-4 0.0 0.0 6.9592953846052525 0.0 20 5.122240438697941E-4 0.0 0.0 7.1608189584363116 0.0 21 5.488114755747794E-4 0.0 0.0 7.385538963968331 0.0 22 5.488114755747794E-4 0.0 0.0 7.608246660756577 0.0 23 5.488114755747794E-4 0.0 0.0 7.823124647159956 0.0 24 5.488114755747794E-4 0.0 0.0 7.999183368524345 0.0 25 5.488114755747794E-4 0.0 0.0 8.157643535238636 0.0 26 5.853989072797647E-4 0.0 0.0 8.312847420531183 0.0 27 5.853989072797647E-4 0.0 0.0 8.477746975225552 0.0 28 5.853989072797647E-4 0.0 0.0 8.655196018994731 0.0 29 5.853989072797647E-4 0.0 0.0 8.843987166592456 0.0 30 5.853989072797647E-4 0.0 0.0 9.069621857917099 0.0 31 5.853989072797647E-4 0.0 0.0 9.25354687709806 0.0 32 6.2198633898475E-4 0.0 0.0 9.452984967321935 0.0 33 6.2198633898475E-4 0.0 0.0 9.645910494702322 0.0 34 6.2198633898475E-4 0.0 0.0 9.837848161426676 0.0 35 6.585737706897353E-4 0.0 0.0 10.05429940739337 0.0 36 7.317486340997058E-4 0.0 0.0 10.253993609639178 0.0 37 7.317486340997058E-4 0.0 0.0 10.465688489484224 0.0 38 7.683360658046911E-4 0.0 0.0 10.693298902120937 0.0 39 7.683360658046911E-4 0.0 0.0 10.989218049750859 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCTCG 45 3.8562575E-10 45.000004 1 CGAACGA 25 3.8922233E-5 44.999996 22 CGTTTTT 84325 0.0 44.455677 1 GTTTTTT 94745 0.0 39.996307 2 TGCGACG 30 1.1403335E-4 37.500004 1 CGATCGC 80 0.0 36.5625 10 TGGGCGA 4430 0.0 36.11174 6 TTGCGCG 350 0.0 36.000004 1 GCCGTCG 25 0.002107616 35.999996 1 TTGGGCG 3595 0.0 35.924896 5 GGCCGAT 900 0.0 35.750004 8 TTGGGAC 5140 0.0 35.544746 5 CGCGGGT 255 0.0 35.294117 4 CGAATAT 160 0.0 35.15625 14 CTTTGCG 615 0.0 35.121952 1 ACGGGCG 155 0.0 34.838707 5 CACGACC 615 0.0 34.756096 27 ACACGAC 620 0.0 34.475807 26 GGGCGAT 6820 0.0 34.40982 7 GCCGATT 530 0.0 34.38679 9 >>END_MODULE