SRR2933704.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933704.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	906654
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22623	2.4952186832021916	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCC	3966	0.437432581778716	No Hit
CTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCT	2799	0.3087175482598654	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	2294	0.25301824069600976	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGC	2169	0.23923128337822366	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1849	0.20393667264469134	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1475	0.16268609634987546	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	992	0.10941329327395016	No Hit
TTCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	971	0.10709708444456209	No Hit
TCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	924	0.10191318849307454	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAC	20	7.0324977E-4	45.0	14
TAAAGCG	20	7.0324977E-4	45.0	10
ATTAACG	20	7.0324977E-4	45.0	21
GCGTTTC	20	7.0324977E-4	45.0	9
GTCGTAG	20	7.0324977E-4	45.0	1
GACGGGC	25	3.890152E-5	45.0	4
ACTCGAA	20	7.0324977E-4	45.0	29
AACTCGA	20	7.0324977E-4	45.0	28
CGCACCC	20	7.0324977E-4	45.0	41
GTCTTCG	50	2.1827873E-11	45.0	1
GCGCTAG	20	7.0324977E-4	45.0	1
TATCCGG	25	3.890152E-5	45.0	2
CTATGCG	30	2.164992E-6	44.999996	1
CGTTTTT	17600	0.0	44.450283	1
TGACGGG	75	0.0	42.000004	3
TCCGCGG	60	3.6379788E-12	41.249996	2
TACGGGT	50	1.0804797E-9	40.5	4
CGTTAGG	90	0.0	40.000004	2
GTTTTTT	19920	0.0	39.871986	2
ATCCGGG	40	3.457153E-7	39.375	3