SRR2933703.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933703.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	905989
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21979	2.4259676441987708	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCC	3933	0.4341112309310599	No Hit
CTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCT	2737	0.3021007981333107	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	2355	0.2599369308015881	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGC	2181	0.2407313996086045	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1829	0.20187883075843083	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1436	0.15850082065014034	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	1032	0.11390866776528191	No Hit
TTCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	930	0.10265025292801569	No Hit
TCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	925	0.10209836984775753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTACG	25	3.890149E-5	45.000004	1
CGTTAGG	50	2.1827873E-11	45.000004	2
CTACGAA	25	3.890149E-5	45.000004	11
CCGGCGG	20	7.032494E-4	45.0	2
TACGAAT	20	7.032494E-4	45.0	12
TCGCTAG	20	7.032494E-4	45.0	1
CGTTTTT	17590	0.0	44.53951	1
TTGCGCG	85	0.0	42.352943	1
GTCTTCG	55	6.002665E-11	40.909092	1
CTGTGCG	55	6.002665E-11	40.909092	1
TGTACGG	50	1.0804797E-9	40.500004	2
CGTCTGG	95	0.0	40.263157	2
ATGGGCG	45	1.927583E-8	40.0	5
GTTTTTT	20185	0.0	39.604904	2
TATCGGG	40	3.457135E-7	39.375	3
TACGGGA	120	0.0	39.374996	4
GCGGGCA	235	0.0	38.29787	5
GGACCGA	290	0.0	38.01724	8
TAGCGGG	95	0.0	37.894737	3
GACCGAT	285	0.0	37.894737	9