SRR2933702.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933702.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1291545
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73902	5.72198413527984	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCC	4976	0.38527500009678334	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGC	2685	0.20789054969048698	No Hit
CTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGCT	2243	0.1736679713056843	TruSeq Adapter, Index 11 (96% over 27bp)
CCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGC	1695	0.13123816824036327	RNA PCR Primer, Index 11 (96% over 26bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1460	0.11304290597695009	No Hit
TCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGC	1371	0.1061519343112319	Illumina PCR Primer Index 11 (100% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCCG	30	2.1657106E-6	45.000004	1
GTCGAGA	35	1.2120836E-7	45.0	35
CAACGGT	20	7.0336106E-4	45.0	7
CCGTGCG	20	7.0336106E-4	45.0	1
ATTCCGG	45	3.8562575E-10	45.0	2
TCGCGCT	20	7.0336106E-4	45.0	3
CGTTTTT	40225	0.0	44.60286	1
GTTTTTT	44370	0.0	40.786003	2
CTTCGCG	40	3.4586628E-7	39.375	1
TGGGTCG	110	0.0	38.863632	6
ACGGGAC	105	0.0	38.57143	5
GCGTTAG	35	6.248889E-6	38.571426	1
TATTCCG	35	6.248889E-6	38.571426	1
TATCCGG	35	6.248889E-6	38.571426	2
CTAGCGG	35	6.248889E-6	38.571426	2
TGGTTCG	95	0.0	37.894737	1
CCGGGAT	215	0.0	37.67442	5
GCCGCCC	30	1.14E-4	37.500004	16
AGGCACG	120	0.0	37.500004	10
TCGAGAT	30	1.14E-4	37.500004	36