SRR2933701.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933701.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1297579
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	72922	5.619850506211954	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCC	4934	0.38024659770233643	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGC	2807	0.21632594238963485	No Hit
CTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGCT	2278	0.17555771170772647	TruSeq Adapter, Index 11 (96% over 27bp)
CCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGC	1703	0.13124441748826082	RNA PCR Primer, Index 11 (96% over 26bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1481	0.11413563258961497	No Hit
TCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGC	1357	0.1045793743579389	Illumina PCR Primer Index 11 (100% over 24bp)
CGCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTG	1333	0.10272977599051773	TruSeq Adapter, Index 11 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCCG	30	2.165718E-6	45.000004	1
CCGTCGG	25	3.891084E-5	45.000004	2
TACTCCG	20	7.033623E-4	45.0	1
CGTTTTT	39630	0.0	44.489025	1
TGTACGG	55	6.184564E-11	40.909092	2
TGTTTCG	145	0.0	40.34483	1
GTTTTTT	44435	0.0	40.083267	2
GCTTACG	40	3.458681E-7	39.375	1
CGGGCGC	35	6.2489107E-6	38.57143	6
CTTACGG	95	0.0	37.894737	2
CGGAATC	30	1.14000286E-4	37.500004	6
TACGGGA	150	0.0	37.5	4
GCGAGAC	115	0.0	37.173916	21
ACGGGAC	110	0.0	36.818184	5
CTGCGCG	55	2.750312E-9	36.818184	1
TTACCGG	55	2.750312E-9	36.818184	2
TTACGGG	185	0.0	36.486485	3
TTGGGCG	1565	0.0	36.08626	5
TTGGGAC	2595	0.0	36.069366	5
TCCGAAG	25	0.002107208	36.000004	13