##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933700.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 954581 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05934121881747 33.0 31.0 34.0 30.0 34.0 2 32.24149757851874 34.0 31.0 34.0 30.0 34.0 3 32.38008194171055 34.0 31.0 34.0 30.0 34.0 4 35.932237285259184 37.0 35.0 37.0 35.0 37.0 5 35.94224586493969 37.0 35.0 37.0 35.0 37.0 6 35.90146357407072 37.0 35.0 37.0 35.0 37.0 7 35.96259615475272 37.0 35.0 37.0 35.0 37.0 8 35.78238619876155 37.0 35.0 37.0 35.0 37.0 9 37.57555304369142 39.0 37.0 39.0 35.0 39.0 10 37.07442008588061 39.0 37.0 39.0 33.0 39.0 11 37.09117193826401 39.0 37.0 39.0 33.0 39.0 12 37.043529045727915 39.0 37.0 39.0 33.0 39.0 13 36.960584801080266 39.0 37.0 39.0 33.0 39.0 14 37.905370000031425 40.0 37.0 41.0 33.0 41.0 15 37.985497301957615 40.0 37.0 41.0 33.0 41.0 16 38.10086938667332 40.0 37.0 41.0 33.0 41.0 17 38.05970891941072 40.0 37.0 41.0 33.0 41.0 18 37.87336538229862 39.0 37.0 40.0 33.0 41.0 19 37.61990758248907 39.0 37.0 40.0 33.0 41.0 20 37.29205902903997 39.0 35.0 40.0 33.0 41.0 21 37.13929881277755 39.0 35.0 40.0 33.0 41.0 22 37.2121098157202 39.0 35.0 40.0 33.0 41.0 23 37.12746849141141 39.0 35.0 40.0 33.0 41.0 24 37.05353448266831 39.0 35.0 40.0 33.0 41.0 25 36.969824457013075 38.0 35.0 40.0 32.0 41.0 26 36.91882616561612 38.0 35.0 40.0 32.0 41.0 27 36.85208379383206 38.0 35.0 40.0 32.0 41.0 28 36.70527592734404 38.0 35.0 40.0 32.0 41.0 29 36.62695884372306 38.0 35.0 40.0 32.0 41.0 30 36.48617246729193 38.0 35.0 40.0 31.0 41.0 31 36.23030104307544 38.0 35.0 40.0 31.0 41.0 32 35.90740021014456 38.0 35.0 40.0 30.0 41.0 33 35.54332214867046 38.0 35.0 40.0 27.0 41.0 34 35.20649583429798 38.0 35.0 40.0 24.0 41.0 35 34.91919910410955 38.0 34.0 40.0 23.0 41.0 36 34.7242476018274 38.0 34.0 40.0 22.0 41.0 37 34.61406313345855 38.0 34.0 40.0 21.0 41.0 38 34.58334494401208 38.0 34.0 40.0 21.0 41.0 39 34.48471737861952 38.0 34.0 40.0 20.0 41.0 40 34.30027310411584 38.0 34.0 40.0 19.0 41.0 41 34.187619489598056 38.0 34.0 40.0 18.0 41.0 42 34.13689356901091 38.0 33.0 40.0 18.0 41.0 43 34.045624205803385 38.0 33.0 40.0 18.0 41.0 44 33.941798548263584 38.0 33.0 40.0 18.0 41.0 45 33.88492333285494 37.0 33.0 40.0 18.0 41.0 46 33.64806339116324 37.0 33.0 40.0 18.0 41.0 47 33.503386302471974 37.0 33.0 40.0 18.0 41.0 48 33.459649835896585 37.0 33.0 40.0 18.0 41.0 49 33.51504377313188 37.0 33.0 40.0 18.0 41.0 50 33.42933705992472 37.0 33.0 40.0 17.0 41.0 51 32.400355758180815 35.0 31.0 39.0 14.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 0.0 9 4.0 10 6.0 11 8.0 12 14.0 13 13.0 14 16.0 15 47.0 16 56.0 17 138.0 18 305.0 19 531.0 20 1001.0 21 1512.0 22 2453.0 23 4180.0 24 7184.0 25 13472.0 26 20866.0 27 24099.0 28 23152.0 29 21628.0 30 22271.0 31 24999.0 32 30246.0 33 40985.0 34 61966.0 35 71955.0 36 93633.0 37 126034.0 38 198343.0 39 163430.0 40 32.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.947928986644403 4.694834697107946 41.45022790103721 27.907008415210445 2 33.693107237625725 4.726785888258828 42.88069844256276 18.69940843155269 3 21.124870492917836 5.2948885427218855 54.17476358737498 19.405477376985296 4 16.314382959644075 5.041688447601618 55.58857760630056 23.055350986453742 5 15.206357553733 6.023480458965766 55.508123459402604 23.26203852789863 6 18.823756182031698 7.007577146412928 57.89084425522822 16.277822416327165 7 69.44575682943615 2.582808583032765 22.603320200171595 5.36811438735948 8 68.92217632657679 3.1013607017110125 21.790502848893915 6.185960122818283 9 62.47316885628354 5.751528681170063 24.996831070385856 6.77847139216054 10 29.854459705357637 24.185166057149683 29.9006579850217 16.059716252470977 11 24.355921603300295 18.972617305393673 36.774982950634886 19.896478140671142 12 20.228665770636542 18.300908985198742 40.46089331340138 21.00953193076334 13 21.412535971279546 18.198560415512148 43.55764466294636 16.831258950261947 14 18.10176402002554 19.394582544592865 44.1120240189151 18.391629416466493 15 15.079705127170978 18.391524658462718 45.37404369037306 21.15472652399325 16 17.18523624501221 19.921620061576757 42.04661521651908 20.846528476891958 17 16.824868712031773 20.583062097401896 40.78281465899698 21.809254531569348 18 18.936371036088083 17.76486227989034 42.52399743971439 20.774769244307187 19 17.41654191734384 22.331263664372116 40.818222864272386 19.433971554011656 20 18.329088888213782 25.076656669261173 37.989337730375944 18.604916712149098 21 16.71277764799425 26.997394668446155 38.56854473323898 17.721282950320614 22 16.151903295791556 22.64197590356397 38.46294866543541 22.74317213520906 23 14.669996574413277 25.541991722022544 37.12770314933987 22.660308554224315 24 15.13396977312559 23.936994346210536 38.27972691683576 22.64930896382811 25 16.813240573612926 25.688548169301505 34.51116248909207 22.987048767993496 26 16.271432178096987 24.662757796352537 36.1904332895794 22.87537673597107 27 17.299946259144065 23.419280291562476 37.25383178588302 22.026941663410437 28 14.910730467084512 23.807303937539086 36.45484249110343 24.827123104272975 29 16.925017363639125 22.56665489885091 35.222364576709566 25.285963160800396 30 20.84118581869951 22.79356073502406 34.53368545990335 21.83156798637308 31 19.646316027660305 26.535726145816856 30.19754216771547 23.620415658807374 32 17.716045050131942 24.822199478095623 30.416172121590517 27.04558335018191 33 18.588679221564224 24.949061420665192 28.990310932231 27.471948425539583 34 16.656732115975494 25.150930093936502 30.525434719526157 27.666903070561847 35 15.062001024533277 27.523594121399857 29.42966600005657 27.984738854010295 36 16.075953743055855 31.41346831751313 25.87417935198794 26.63639858744308 37 15.577410403098323 29.408295367286797 27.520032349271567 27.494261880343313 38 16.13964660935007 27.09963848012898 30.245835607454996 26.514879303065953 39 17.45896890887206 26.772479234344704 28.8619823776086 26.90656947917463 40 19.84870849095048 27.66700782856562 28.566041016948795 23.9182426635351 41 16.399551216711835 26.735709175020244 26.739375705152312 30.12536390311561 42 18.544157069960537 23.936994346210536 28.647123711869398 28.871724871959533 43 17.895914542610843 22.055226324429253 32.965667659423346 27.083191473536555 44 19.770873294146856 23.256172079687317 30.965627851381917 26.007326774783913 45 21.178192316838487 22.24096226511946 30.015053725142238 26.565791692899815 46 20.82997671229576 23.554941906449006 30.80210060749166 24.812980773763567 47 17.087287511484096 26.21789036236841 32.72849553888041 23.966326587267083 48 17.38270508212504 24.495144990315122 33.535760715958105 24.586389211601738 49 21.800245343244836 21.075005683121706 32.64573671589944 24.47901225773402 50 19.106707550223607 20.83615743451839 32.58811981382407 27.469015201433926 51 18.048127922093567 19.459846780943682 30.479236439862095 32.01278885710065 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 920.0 1 1876.5 2 2833.0 3 23697.0 4 44561.0 5 28147.0 6 11733.0 7 11146.5 8 10560.0 9 10640.0 10 10720.0 11 10539.0 12 10358.0 13 9925.0 14 9492.0 15 8949.0 16 8406.0 17 7863.5 18 7321.0 19 6944.5 20 6568.0 21 6229.0 22 5890.0 23 5938.5 24 5987.0 25 6061.0 26 6490.5 27 6846.0 28 7483.5 29 8121.0 30 8868.5 31 9616.0 32 10770.0 33 11924.0 34 13403.5 35 14883.0 36 16036.5 37 17190.0 38 18952.0 39 20714.0 40 23891.5 41 27069.0 42 32736.5 43 38404.0 44 46389.0 45 54374.0 46 69765.5 47 85157.0 48 99958.0 49 114759.0 50 115840.5 51 116922.0 52 101760.5 53 86599.0 54 71222.0 55 55845.0 56 46446.5 57 37048.0 58 32879.5 59 28711.0 60 25105.5 61 21500.0 62 19174.0 63 16848.0 64 14841.0 65 12834.0 66 10774.0 67 8714.0 68 7336.5 69 5959.0 70 5105.5 71 4252.0 72 3693.0 73 3134.0 74 2812.5 75 2020.5 76 1550.0 77 1252.0 78 954.0 79 682.5 80 411.0 81 286.0 82 161.0 83 106.5 84 52.0 85 36.5 86 21.0 87 20.0 88 19.0 89 11.5 90 4.0 91 5.5 92 7.0 93 5.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 954581.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.80228825223162 #Duplication Level Percentage of deduplicated Percentage of total 1 72.80783024215964 28.25110416075825 2 9.743377352844602 7.561306731906835 3 4.604691218751996 5.360176679476041 4 2.7729903377594556 4.303934816255821 5 1.9128967746227539 3.711238602283812 6 1.4410936962635696 3.3550639800535764 7 1.106604160525565 3.005714153248223 8 0.911931186918306 2.8308013424803056 9 0.7019840355425581 2.451472820602843 >10 3.744796837924918 23.344396949130086 >50 0.16083043924133364 4.322595694081962 >100 0.08582937032983541 6.355029724656186 >500 0.0032490613361351233 0.7990801136605767 >1k 0.0016245306680675617 1.3708121644810944 >5k 0.0 0.0 >10k+ 2.707551113445936E-4 2.977272066924413 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28339 2.968737068933909 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCC 3836 0.4018517024746983 No Hit CTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGCT 2469 0.25864751131648334 RNA PCR Primer, Index 29 (96% over 26bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGC 1962 0.20553520340337805 No Hit CCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 1771 0.1855264246826618 RNA PCR Primer, Index 29 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 1563 0.1637367598977981 Illumina PCR Primer Index 8 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 1447 0.1515848314600856 Illumina PCR Primer Index 8 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.095160075467666E-4 0.0 0.0 0.2822180621654946 0.0 2 2.095160075467666E-4 0.0 0.0 0.843720962390829 0.0 3 2.095160075467666E-4 0.0 0.0 1.272809745846607 0.0 4 2.095160075467666E-4 0.0 0.0 1.9632697487169763 0.0 5 2.095160075467666E-4 0.0 0.0 3.5712003486346364 0.0 6 2.095160075467666E-4 0.0 0.0 5.768604235785125 0.0 7 2.095160075467666E-4 0.0 0.0 7.737321400698317 0.0 8 2.095160075467666E-4 0.0 0.0 10.754037635360435 0.0 9 3.1427401132014986E-4 0.0 0.0 12.611606558270068 0.0 10 3.1427401132014986E-4 0.0 0.0 15.454214990660825 0.0 11 3.1427401132014986E-4 0.0 0.0 20.114479546523555 0.0 12 3.1427401132014986E-4 0.0 0.0 23.92159491965585 0.0 13 3.1427401132014986E-4 0.0 0.0 25.337608856660673 0.0 14 4.190320150935332E-4 0.0 0.0 26.0097362088707 0.0 15 4.190320150935332E-4 0.0 0.0 26.728271356752334 0.0 16 4.190320150935332E-4 0.0 0.0 28.153084966074122 0.0 17 4.190320150935332E-4 0.0 0.0 29.796109497255863 0.0 18 4.190320150935332E-4 0.0 0.0 31.33584263671705 0.0 19 4.190320150935332E-4 0.0 0.0 32.27782660664732 0.0 20 4.190320150935332E-4 0.0 0.0 33.172669474879555 0.0 21 4.190320150935332E-4 0.0 0.0 34.145557055922964 0.0 22 4.190320150935332E-4 0.0 0.0 35.03631436200804 0.0 23 4.190320150935332E-4 0.0 0.0 35.67837616713511 0.0 24 5.237900188669165E-4 0.0 0.0 36.091646492021106 0.0 25 5.237900188669165E-4 0.0 0.0 36.40759663140163 0.0 26 5.237900188669165E-4 0.0 0.0 36.67630091108036 0.0 27 5.237900188669165E-4 0.0 0.0 36.9665853395364 0.0 28 6.285480226402997E-4 0.0 0.0 37.223975754807604 0.0 29 6.285480226402997E-4 0.0 0.0 37.496975112641046 0.0 30 6.285480226402997E-4 0.0 0.0 37.83785765691963 0.0 31 6.285480226402997E-4 0.0 0.0 38.06727768518334 0.0 32 6.285480226402997E-4 0.0 0.0 38.44461601477507 0.0 33 6.285480226402997E-4 0.0 0.0 38.705463444170796 0.0 34 6.285480226402997E-4 0.0 0.0 38.96013015134389 0.0 35 6.285480226402997E-4 0.0 0.0 39.249471757765974 0.0 36 6.285480226402997E-4 0.0 0.0 39.46925404968253 0.0 37 6.285480226402997E-4 0.0 0.0 39.688617309584 0.0 38 6.285480226402997E-4 0.0 0.0 39.96549271355705 0.0 39 6.285480226402997E-4 0.0 0.0 40.55381366274837 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATAC 30 2.165114E-6 44.999996 9 CGTTTTT 12960 0.0 43.90625 1 CGAACGA 50 1.0804797E-9 40.5 22 GATAACG 50 1.0804797E-9 40.5 17 CGCACGG 45 1.927765E-8 40.000004 2 GTTTTTT 15005 0.0 39.496834 2 CGTTCAT 40 3.4574077E-7 39.375 17 GCTACGA 110 0.0 38.863636 10 TTGGGAC 1685 0.0 38.590504 5 TCGTTAG 35 6.247177E-6 38.571426 1 GCGTACG 35 6.247177E-6 38.571426 1 AACACGT 550 0.0 38.045456 41 CGAGACA 730 0.0 37.91096 22 CGTTTGG 375 0.0 37.8 2 TCTGGGA 2120 0.0 37.78302 4 AGGCACG 215 0.0 37.67442 10 ACGACCA 705 0.0 37.659573 28 GCGAGAC 735 0.0 37.65306 21 ACACGAC 720 0.0 37.500004 26 CACGACC 720 0.0 37.500004 27 >>END_MODULE