SRR2933698.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933698.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	852407
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37305	4.376430507961572	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCC	3574	0.41928327665070797	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGC	1868	0.21914414123769513	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC	1625	0.19063663250067162	TruSeq Adapter, Index 14 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGCT	1046	0.12271133390504771	Illumina Paired End PCR Primer 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTG	1046	0.12271133390504771	No Hit
TCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC	985	0.1155551280080994	TruSeq Adapter, Index 14 (95% over 23bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCG	900	0.10558336569267968	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTACGG	35	1.2114288E-7	45.000004	2
ATTGCGC	30	2.1648393E-6	45.000004	12
CTTCGCG	55	1.8189894E-12	45.0	1
TTACTCG	25	3.8899554E-5	45.0	1
CCTCGCG	20	7.03226E-4	45.0	1
GCGTCCC	25	3.8899554E-5	45.0	7
CCGTTCG	20	7.03226E-4	45.0	1
CGTTTTT	22945	0.0	44.441055	1
AGCTACG	75	0.0	42.0	9
CTTTTCG	135	0.0	41.666664	1
ACGGGAT	65	0.0	41.53846	5
CTGTCCG	50	1.0804797E-9	40.5	1
GTTTTTT	25565	0.0	40.43223	2
CTTTGCG	240	0.0	40.312504	1
GGCGATA	45	1.9272193E-8	40.0	8
CTCGTTG	80	0.0	39.375	1
TCGCTTG	110	0.0	38.863636	1
CGGGTCA	70	0.0	38.57143	6
GCGGTGT	35	6.246388E-6	38.57143	5
GCCGATC	35	6.246388E-6	38.57143	9