SRR2933697.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933697.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	821166
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36443	4.437957733271957	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCC	3377	0.4112444986762725	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGC	1769	0.21542538293110042	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC	1601	0.1949666693457839	TruSeq Adapter, Index 14 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTG	1097	0.13359052858983445	No Hit
CTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGCT	1045	0.12725806962295078	Illumina Paired End PCR Primer 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC	955	0.11629804448795981	TruSeq Adapter, Index 14 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	20	7.0321077E-4	45.000004	1
ATTCGCG	20	7.0321077E-4	45.000004	1
CGCCTCG	20	7.0321077E-4	45.000004	1
CTATGCG	25	3.88983E-5	45.0	1
GATCGGA	25	3.88983E-5	45.0	9
TCGATGA	25	3.88983E-5	45.0	38
TACGAAT	50	2.1827873E-11	45.0	12
TGGTCCG	25	3.88983E-5	45.0	1
CTCGATG	30	2.164741E-6	44.999996	37
CGTTTTT	22495	0.0	44.45988	1
TCTTGCG	130	0.0	43.269234	1
TACGGGA	100	0.0	42.75	4
TCTCTCG	60	3.6379788E-12	41.249996	1
GGCACGT	55	6.002665E-11	40.909092	11
CGAATAT	55	6.002665E-11	40.909092	14
TGTACGG	50	1.0804797E-9	40.5	2
GTTTTTT	25460	0.0	39.95385	2
TTTCGCG	85	0.0	39.705883	1
CTCTCCG	40	3.4566074E-7	39.375004	1
ACGGGTA	35	6.2461113E-6	38.571426	5