SRR2933688.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933688.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	885528
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52074	5.88055939507277	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCC	1435	0.16205021185100868	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1173	0.13246334390329836	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	945	0.10671599317017644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCGG	55	1.8189894E-12	45.0	2
CGTTTTT	30110	0.0	44.58901	1
GTTTTTT	33550	0.0	40.533535	2
ACGGGAC	85	0.0	39.705883	5
GCCTTCG	40	3.4570257E-7	39.375	1
TACGCGG	40	3.4570257E-7	39.375	2
TTACTCG	35	6.2466643E-6	38.57143	1
GCTCGTA	35	6.2466643E-6	38.57143	32
TACGGGA	260	0.0	38.076927	4
CGGGCTT	65	9.094947E-12	38.076927	6
CGAACGA	30	1.1397101E-4	37.500004	22
CGTTGAT	30	1.1397101E-4	37.500004	25
TATTGCG	30	1.1397101E-4	37.500004	1
GCGATTA	30	1.1397101E-4	37.500004	9
GCGATGA	30	1.1397101E-4	37.500004	9
CGCGTGG	30	1.1397101E-4	37.500004	2
TGTACGG	60	1.546141E-10	37.500004	2
ACGAACG	30	1.1397101E-4	37.500004	21
GCGTTCG	55	2.748493E-9	36.81818	1
CGCAGAC	55	2.748493E-9	36.81818	37