SRR2933686.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933686.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	767928
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23641	3.0785438218166283	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC	2905	0.37829067308393494	No Hit
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	2009	0.2616130678917815	No Hit
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1803	0.234787636340907	No Hit
TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1476	0.19220551926743132	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC	1425	0.1855642716504672	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1077	0.14024752320530048	No Hit
CGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG	786	0.10235334562615245	No Hit
TCCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG	785	0.10222312508464335	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAG	25	3.8895923E-5	45.0	9
TCGCGCG	30	2.1645574E-6	44.999996	1
CGTTTTT	9870	0.0	43.791794	1
AGACACG	105	0.0	42.857143	24
CTACGAA	90	0.0	42.5	11
TACGAAT	90	0.0	42.5	12
GCTACGA	90	0.0	42.5	10
AGCTACG	90	0.0	42.5	9
AGGCACG	65	0.0	41.53846	10
CGTTAGG	60	3.6379788E-12	41.249996	2
CGACCAA	105	0.0	40.714287	29
GGCGATA	50	1.0804797E-9	40.5	8
CGTTCAT	45	1.9268555E-8	40.0	17
ACGGGAT	45	1.9268555E-8	40.0	5
CGGGCTC	80	0.0	39.375004	6
GTTTTTT	11270	0.0	39.210297	2
TTGGGAC	1780	0.0	38.932587	5
ACACGAC	110	0.0	38.863636	26
CACGACC	110	0.0	38.863636	27
AAACACG	110	0.0	38.863636	40