SRR2933682.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933682.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	497444
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20362	4.093325077797702	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCC	713	0.14333271684852966	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	529	0.1063436286295543	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	514	0.10332821382909434	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCAT	30	2.1630094E-6	45.000004	17
CGCACGA	20	7.0294226E-4	45.000004	39
AATCGTT	20	7.0294226E-4	45.000004	22
TAATCGT	20	7.0294226E-4	45.000004	21
TAACGTC	25	3.8876035E-5	45.0	32
CGGTAGG	35	1.2100645E-7	45.0	31
CGTTTTT	10645	0.0	43.77407	1
GCTACGA	65	0.0	41.53846	10
TACGGGA	45	1.9244908E-8	40.0	4
CGGGAAT	85	0.0	39.705883	6
CTTCGTG	40	3.4529512E-7	39.375004	1
GCGATTC	115	0.0	39.130432	9
GCGATGT	190	0.0	39.078945	9
TGGTTCG	35	6.2411455E-6	38.571426	1
CGAATAT	70	0.0	38.571426	14
ATAACGT	35	6.2411455E-6	38.571426	31
GTTTTTT	12640	0.0	38.23576	2
TTACACG	165	0.0	38.181816	34
AGCTACG	65	9.094947E-12	38.07692	9
CGTGCGG	60	1.546141E-10	37.500004	2