##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933679.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 191945 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.60654354111855 31.0 31.0 34.0 30.0 34.0 2 31.790856755841517 33.0 31.0 34.0 30.0 34.0 3 32.00075021490531 33.0 31.0 34.0 30.0 34.0 4 35.59387845476569 37.0 35.0 37.0 33.0 37.0 5 35.680606423715126 37.0 35.0 37.0 35.0 37.0 6 35.67481830732762 37.0 35.0 37.0 35.0 37.0 7 35.668837427388056 37.0 35.0 37.0 35.0 37.0 8 35.48785850113314 37.0 35.0 37.0 33.0 37.0 9 37.27326056943395 39.0 37.0 39.0 34.0 39.0 10 36.72132121180547 39.0 37.0 39.0 32.0 39.0 11 36.7681888040845 39.0 37.0 39.0 32.0 39.0 12 36.93654953241814 39.0 37.0 39.0 33.0 39.0 13 36.93426241892209 39.0 37.0 39.0 33.0 39.0 14 37.9082393393941 39.0 37.0 41.0 33.0 41.0 15 37.86156972049285 39.0 37.0 41.0 33.0 41.0 16 38.05338508426893 39.0 37.0 41.0 33.0 41.0 17 38.126916564640915 40.0 37.0 41.0 33.0 41.0 18 38.077543046185106 39.0 37.0 40.0 34.0 41.0 19 37.945823022219905 39.0 37.0 40.0 34.0 41.0 20 37.53814894891766 39.0 35.0 40.0 33.0 41.0 21 37.43859959884342 39.0 35.0 40.0 33.0 41.0 22 37.456891296986115 39.0 35.0 40.0 33.0 41.0 23 37.34486962411108 39.0 35.0 40.0 33.0 41.0 24 37.22799239365443 39.0 35.0 40.0 33.0 41.0 25 37.16953293912319 39.0 35.0 40.0 33.0 41.0 26 37.217338300033866 39.0 35.0 40.0 33.0 41.0 27 37.18667326577926 39.0 35.0 40.0 33.0 41.0 28 37.19770246685248 39.0 35.0 40.0 33.0 41.0 29 37.10212821381125 39.0 35.0 40.0 33.0 41.0 30 36.91163614577093 39.0 35.0 40.0 32.0 41.0 31 36.67833493969627 39.0 35.0 40.0 31.0 41.0 32 36.555622704420536 39.0 35.0 40.0 31.0 41.0 33 36.240318841334755 39.0 35.0 40.0 30.0 41.0 34 36.10510302430384 39.0 35.0 40.0 29.0 41.0 35 36.00764281434786 39.0 35.0 40.0 29.0 41.0 36 35.89442809138034 39.0 35.0 40.0 27.0 41.0 37 35.75269999218526 39.0 35.0 40.0 26.0 41.0 38 35.59615514861028 39.0 35.0 40.0 26.0 41.0 39 35.630592096694365 39.0 35.0 40.0 25.0 41.0 40 35.54450493630988 39.0 35.0 40.0 25.0 41.0 41 35.501320690822894 39.0 35.0 40.0 25.0 41.0 42 35.39576962150616 39.0 35.0 40.0 24.0 41.0 43 35.295516944958194 39.0 35.0 40.0 24.0 41.0 44 35.173982130297745 39.0 35.0 40.0 23.0 41.0 45 35.12120659563938 38.0 35.0 40.0 23.0 41.0 46 34.791956029070825 38.0 34.0 40.0 23.0 41.0 47 34.6997264841491 38.0 34.0 40.0 23.0 41.0 48 34.6559066399229 38.0 34.0 40.0 22.0 41.0 49 34.78159889551694 38.0 34.0 40.0 22.0 41.0 50 34.62880512646852 38.0 34.0 40.0 22.0 41.0 51 33.76813149600146 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 2.0 12 5.0 13 13.0 14 7.0 15 10.0 16 11.0 17 13.0 18 50.0 19 97.0 20 116.0 21 252.0 22 405.0 23 652.0 24 1174.0 25 2015.0 26 3092.0 27 3614.0 28 3576.0 29 3667.0 30 4089.0 31 4749.0 32 5731.0 33 7422.0 34 10352.0 35 14310.0 36 19112.0 37 25277.0 38 43975.0 39 38150.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.344760217770716 5.1212586938966895 44.2434030581677 25.29057803016489 2 31.19747844434604 5.38643882362135 43.24415848289875 20.171924249133866 3 20.65122821641616 5.516684466904582 52.42074552606215 21.411341790617104 4 16.256740212039908 5.513558571465785 53.58930943759931 24.640391778894998 5 13.518976790226366 7.2843783375446085 55.06004324155357 24.136601630675454 6 18.02755997811873 8.227877777488343 59.02836750110709 14.716194743285838 7 68.19818177081977 2.783088905676105 22.819036703222277 6.199692620281851 8 65.9616035843601 3.4520305295787854 21.903670322227722 8.68269556383339 9 59.291984683112354 6.190314933965459 25.850634296282788 8.667066086639402 10 27.489124488785848 21.510849462085492 32.2300659042955 18.769960144833156 11 16.286436218708484 19.326369532939122 38.314100393341846 26.073093855010548 12 15.77691526218448 14.243142566881136 45.69069264633098 24.289249524603402 13 20.689259944254864 15.627914246268462 47.96165568261742 15.721170126859258 14 18.10362343379614 18.355778999192477 44.60131808591002 18.939279481101355 15 11.81015395035036 18.341191487144755 47.15569564198078 22.69295892052411 16 10.598869467816302 18.209382896142124 43.53955560186512 27.65219203417646 17 10.339941128969237 18.506342962827894 41.85209304748756 29.30162286071531 18 11.727838703795358 16.759488395113184 46.680038552710414 24.832634348381045 19 12.116491703352523 19.993227226549273 47.912162338169786 19.97811873192842 20 12.128995285107713 24.447628226835814 43.84693532001355 19.57644116804293 21 10.844773242335044 26.722759123707313 43.59165385917841 18.84081377477923 22 9.103649482924796 24.102737763421814 40.495975409622545 26.297637344030843 23 9.878871551746595 24.528901508244548 37.32267055666988 28.26955638333898 24 11.49495949360494 23.184245486988463 37.57534710463935 27.74544791476725 25 10.23053478861132 26.01422282424653 34.23584881085728 29.519393576284873 26 9.530334210320666 26.400791893511162 38.05308812420225 26.015785771965927 27 12.965172314986065 24.700304774805282 40.28080960691865 22.053713303290003 28 10.864049597540962 20.8606632108156 40.25319753054261 28.022089661100836 29 12.543697413321524 19.167990830706714 37.786345046758186 30.50196670921358 30 19.98801740081794 20.868477949412593 34.83862564797208 24.30487900179739 31 18.705879288337805 27.888197139805676 27.973638281799474 25.43228529005705 32 14.526036104092318 27.77774883430149 27.7714970434239 29.92471801818229 33 17.873349136471383 20.21151892469197 29.67620933079789 32.23892260803876 34 18.78142176144208 16.822006303889133 28.598296386985854 35.79827554768293 35 13.671624684154315 17.300268306025163 30.930214384328846 38.097892625491674 36 16.252051368881713 16.817838443304073 37.14814139467035 29.78196879314387 37 20.824715413269427 19.558727760556412 36.45315064211102 23.163406184063142 38 20.870040897131993 24.73677355492459 30.493630988043453 23.899554559899972 39 17.998905936596422 20.714267107765245 28.78220323530178 32.504623720336554 40 16.644351246450807 14.85373414259293 30.827059834848527 37.67485477610774 41 13.903461929198468 14.908437312771888 37.45239521737998 33.73570554064966 42 17.464377816562035 14.39266456537029 45.322357967125996 22.820599650941674 43 18.526140300606944 15.305426033499177 44.82481960978405 21.34361405610982 44 18.954908958295345 16.59329495428378 33.57941076870979 30.87238531871109 45 22.425694860506916 13.925864179843185 29.555862356404177 34.09257860324572 46 23.358774648987993 14.464560160462634 36.184844616947565 25.991820573601814 47 15.09182317851468 19.51809111985204 41.85209304748756 23.53799265414572 48 14.769334965745395 18.67670426424236 43.643752116491704 22.910208653520538 49 21.760921097189296 12.375941024772722 42.12196202037042 23.74117585766756 50 20.65487509442809 9.985672979238844 36.52869311521529 32.83075881111777 51 17.494073823230615 9.651202167287504 33.14074344213186 39.71398056735002 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 271.0 1 487.0 2 703.0 3 4531.5 4 8360.0 5 5191.5 6 2023.0 7 1916.5 8 1810.0 9 1776.0 10 1742.0 11 1655.5 12 1569.0 13 1465.0 14 1361.0 15 1251.5 16 1142.0 17 1052.5 18 963.0 19 880.5 20 798.0 21 752.0 22 706.0 23 706.0 24 706.0 25 648.0 26 640.0 27 690.0 28 759.5 29 829.0 30 959.0 31 1089.0 32 1170.5 33 1252.0 34 1429.5 35 1607.0 36 1841.0 37 2075.0 38 2482.0 39 2889.0 40 3752.5 41 4616.0 42 6552.5 43 8489.0 44 10675.5 45 12862.0 46 17788.0 47 22714.0 48 28342.0 49 33970.0 50 33961.5 51 33953.0 52 27306.5 53 20660.0 54 15007.0 55 9354.0 56 6669.0 57 3984.0 58 3108.5 59 2233.0 60 1919.0 61 1605.0 62 1444.0 63 1283.0 64 1130.0 65 977.0 66 816.0 67 655.0 68 529.0 69 403.0 70 383.5 71 364.0 72 300.5 73 237.0 74 214.0 75 153.0 76 115.0 77 89.0 78 63.0 79 42.0 80 21.0 81 17.0 82 13.0 83 9.0 84 5.0 85 3.5 86 2.0 87 1.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 191945.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.93490322748704 #Duplication Level Percentage of deduplicated Percentage of total 1 75.28307097486882 38.34535934772982 2 12.488876614808678 12.72239443590612 3 4.942362965008643 7.5521633801349335 4 2.401628361308008 4.893068326864467 5 1.2826413820614317 3.266560733543463 6 0.8059979338631645 2.463205605772487 7 0.49198604846216004 1.7541483237385709 8 0.3886792066852824 1.5837870223241033 9 0.2792353248028476 1.280054182187606 >10 1.4780038254216659 13.620047409414154 >50 0.10944388188243476 3.754721404569017 >100 0.041936440721306784 3.4718278673578373 >500 0.004091360070371393 1.8109354242100602 >1k 0.0010228400175928483 0.5663080569954935 >5k 0.0010228400175928483 2.915418479251869 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5596 2.915418479251869 No Hit CTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGCT 1087 0.5663080569954935 TruSeq Adapter, Index 16 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGC 990 0.5157727474015994 TruSeq Adapter, Index 13 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGC 886 0.46159055979577485 TruSeq Adapter, Index 13 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGC 864 0.45012894318685037 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCC 736 0.38344317382583554 No Hit TCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTG 367 0.19120060433978484 TruSeq Adapter, Index 16 (95% over 21bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGC 359 0.18703274375472143 No Hit TTCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCT 286 0.1490010159160176 No Hit GCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTG 258 0.13441350386829562 No Hit GGCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCT 234 0.1219099221131053 No Hit GTTCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTC 225 0.11722107895490896 No Hit TGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTG 213 0.11096928807731381 TruSeq Adapter, Index 16 (95% over 21bp) TGCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCT 207 0.10784339263851624 No Hit CGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTG 201 0.10471749719971866 TruSeq Adapter, Index 16 (95% over 21bp) TTTCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTC 197 0.10263356690718695 No Hit GTGCCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTC 197 0.10263356690718695 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 194 0.10107061918778817 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0010419651462658574 0.0 0.0 0.614238453723723 0.0 2 0.0010419651462658574 0.0 0.0 2.169892417098648 0.0 3 0.0010419651462658574 0.0 0.0 3.0946364844095964 0.0 4 0.0010419651462658574 0.0 0.0 4.581520748130975 0.0 5 0.0010419651462658574 0.0 0.0 7.673031337101774 0.0 6 0.0010419651462658574 0.0 0.0 10.252937039256038 0.0 7 0.0010419651462658574 0.0 0.0 12.627054625022794 0.0 8 0.0010419651462658574 0.0 0.0 16.357810831227695 0.0 9 0.0010419651462658574 0.0 0.0 18.03797962958139 0.0 10 0.0010419651462658574 0.0 0.0 22.03495793065722 0.0 11 0.0010419651462658574 0.0 0.0 31.334496861079998 0.0 12 0.0010419651462658574 0.0 0.0 39.673864909218786 0.0 13 0.0010419651462658574 0.0 0.0 42.35119435254891 0.0 14 0.0010419651462658574 0.0 0.0 43.22488212769283 0.0 15 0.0010419651462658574 0.0 0.0 44.478366198650654 0.0 16 0.0010419651462658574 0.0 0.0 47.65948579020032 0.0 17 0.0010419651462658574 0.0 0.0 51.67678241162833 0.0 18 0.0010419651462658574 0.0 0.0 55.40493370496757 0.0 19 0.0010419651462658574 0.0 0.0 57.60973195446612 0.0 20 0.0010419651462658574 0.0 0.0 59.53476256219229 0.0 21 0.0010419651462658574 0.0 0.0 61.831774727135375 0.0 22 0.0010419651462658574 0.0 0.0 63.631248534736514 0.0 23 0.0010419651462658574 0.0 0.0 64.95454427049415 0.0 24 0.0010419651462658574 0.0 0.0 65.62192294667743 0.0 25 0.0010419651462658574 0.0 0.0 66.06788402927923 0.0 26 0.0010419651462658574 0.0 0.0 66.41485842298574 0.0 27 0.0010419651462658574 0.0 0.0 66.67795462241789 0.0 28 0.0010419651462658574 0.0 0.0 66.93427804839928 0.0 29 0.0010419651462658574 0.0 0.0 67.14631795566439 0.0 30 0.0010419651462658574 0.0 0.0 67.37555028784287 0.0 31 0.0010419651462658574 0.0 0.0 67.55685222329313 0.0 32 0.0010419651462658574 0.0 0.0 67.72200369897627 0.0 33 0.0010419651462658574 0.0 0.0 67.90017973898773 0.0 34 0.0010419651462658574 0.0 0.0 68.04084503373362 0.0 35 0.0010419651462658574 0.0 0.0 68.17056969444373 0.0 36 0.0010419651462658574 0.0 0.0 68.29247961655683 0.0 37 0.0010419651462658574 0.0 0.0 68.410742660658 0.0 38 0.0010419651462658574 0.0 0.0 68.5560967985621 0.0 39 0.0010419651462658574 0.0 0.0 68.70092995389304 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGAG 30 2.1560245E-6 45.000004 5 TTAGGGA 30 2.1560245E-6 45.000004 4 GTCTGGT 30 2.1560245E-6 45.000004 3 CTCGGGA 30 2.1560245E-6 45.000004 4 ACTAATC 30 2.1560245E-6 45.000004 10 TAGGGCG 30 2.1560245E-6 45.000004 5 CTGGATA 30 2.1560245E-6 45.000004 5 GACTAAT 30 2.1560245E-6 45.000004 9 CTTCGTG 25 3.8786286E-5 45.0 1 GTGTTAG 20 7.0185907E-4 45.0 1 CATGGGA 25 3.8786286E-5 45.0 4 CTGTCGG 20 7.0185907E-4 45.0 2 TCTTGCG 40 6.7648216E-9 45.0 1 ACACGCG 20 7.0185907E-4 45.0 36 GAGCTAG 20 7.0185907E-4 45.0 1 TGCTTCG 20 7.0185907E-4 45.0 1 AAGAGCA 20 7.0185907E-4 45.0 35 CGTGCGG 20 7.0185907E-4 45.0 2 AACCCGA 20 7.0185907E-4 45.0 24 CGGTTTG 25 3.8786286E-5 45.0 1 >>END_MODULE