SRR2933676.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933676.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	65769
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4459	6.779789870607733	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCC	330	0.5017561465127948	No Hit
CCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	304	0.46222384406027156	Illumina Single End Adapter 1 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT	281	0.42725296112150096	Illumina Single End Adapter 1 (96% over 25bp)
TCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	220	0.33450409767519657	Illumina Single End Adapter 1 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	217	0.32994267816144385	Illumina Single End Adapter 1 (95% over 24bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGC	150	0.228070975687634	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	130	0.1976615122626161	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	109	0.16573157566634739	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	90	0.13684258541258038	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87	0.1322811658988277	No Hit
GCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	72	0.10947406833006432	Illumina Single End Adapter 1 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGGGC	35	1.1887278E-7	45.000004	4
TGTTGTG	20	6.9848174E-4	45.0	45
TTATGGG	40	6.6484063E-9	45.0	3
CGTTTGG	20	6.9848174E-4	45.0	2
TGTTGCG	20	6.9848174E-4	45.0	1
ATGGGCC	20	6.9848174E-4	45.0	5
TTGTCCT	20	6.9848174E-4	45.0	1
TTCGTGG	25	3.8506878E-5	45.0	2
CGGGCTC	20	6.9848174E-4	45.0	6
TTGGGTA	25	3.8506878E-5	45.0	5
ATTTGGG	20	6.9848174E-4	45.0	3
TGGGCTT	20	6.9848174E-4	45.0	6
TGGGCCG	20	6.9848174E-4	45.0	6
TTTGTTG	20	6.9848174E-4	45.0	1
TTTCGTG	20	6.9848174E-4	45.0	1
CCTGGCC	20	6.9848174E-4	45.0	29
TCGGGCT	20	6.9848174E-4	45.0	5
GGGTACC	30	2.134324E-6	44.999996	7
TACATGG	30	2.134324E-6	44.999996	2
GTGCTTG	30	2.134324E-6	44.999996	1