SRR2933675.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933675.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66605
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4533	6.805795360708656	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCC	346	0.5194805194805194	No Hit
CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT	317	0.4759402447263719	Illumina Single End Adapter 1 (96% over 25bp)
CCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	297	0.44591246903385634	Illumina Single End Adapter 1 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	218	0.32730275504841977	Illumina Single End Adapter 1 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	207	0.31078747841753623	Illumina Single End Adapter 1 (95% over 24bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGC	175	0.2627430373095113	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	121	0.18166804293971925	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	111	0.16665415509346143	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	96	0.14413332332407477	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	88	0.13212221304706853	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	86	0.12911943547781699	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	76	0.1141055476315592	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	74	0.11110277006230763	Illumina Single End Adapter 1 (95% over 23bp)
GCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	67	0.10059304856992718	Illumina Single End Adapter 1 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCTCTG	20	6.9854734E-4	45.0	1
AATTCGA	20	6.9854734E-4	45.0	13
TGATTGG	25	3.8512288E-5	45.0	2
AGGGCCT	35	1.189037E-7	45.0	6
AGGGTCT	20	6.9854734E-4	45.0	6
GTATTGG	20	6.9854734E-4	45.0	2
CTAGGGT	20	6.9854734E-4	45.0	4
TCCGGGC	20	6.9854734E-4	45.0	4
GTCTTTG	20	6.9854734E-4	45.0	1
TCGTTTG	25	3.8512288E-5	45.0	1
CGAGCTC	20	6.9854734E-4	45.0	17
GAATTCG	20	6.9854734E-4	45.0	12
GGGACAT	20	6.9854734E-4	45.0	7
CGGTTTT	20	6.9854734E-4	45.0	1
TGGGACA	45	3.7289283E-10	45.0	6
TCGAGCT	20	6.9854734E-4	45.0	16
TGCGGGC	20	6.9854734E-4	45.0	4
TTACGGG	20	6.9854734E-4	45.0	3
TATTGGG	30	2.1347423E-6	44.999996	3
CGTTTTT	1490	0.0	44.395973	1