##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933675.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 66605 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.932527588018917 33.0 31.0 34.0 30.0 34.0 2 32.14579986487501 34.0 31.0 34.0 30.0 34.0 3 32.24257938593199 33.0 31.0 34.0 30.0 34.0 4 35.8190826514526 37.0 35.0 37.0 35.0 37.0 5 35.89922678477592 37.0 35.0 37.0 35.0 37.0 6 35.8990916597853 37.0 35.0 37.0 35.0 37.0 7 35.87024998123264 37.0 35.0 37.0 35.0 37.0 8 35.722753547031004 37.0 35.0 37.0 35.0 37.0 9 37.58983559792809 39.0 37.0 39.0 35.0 39.0 10 37.16863598828917 39.0 37.0 39.0 33.0 39.0 11 37.1743262517829 39.0 37.0 39.0 34.0 39.0 12 37.208212596651904 39.0 37.0 39.0 34.0 39.0 13 37.18952030628331 39.0 37.0 39.0 34.0 39.0 14 38.357495683507246 40.0 38.0 41.0 34.0 41.0 15 38.3612791832445 40.0 38.0 41.0 34.0 41.0 16 38.507979881390284 40.0 38.0 41.0 34.0 41.0 17 38.5249605885444 40.0 38.0 41.0 34.0 41.0 18 38.167269724495156 39.0 38.0 40.0 34.0 41.0 19 37.77045266871856 38.0 37.0 40.0 34.0 41.0 20 37.13327828241123 38.0 35.0 40.0 34.0 41.0 21 37.03990691389535 38.0 35.0 40.0 33.0 41.0 22 37.02274604008708 38.0 35.0 40.0 33.0 41.0 23 36.93524510171909 38.0 35.0 40.0 33.0 41.0 24 36.843104872006606 38.0 35.0 40.0 33.0 41.0 25 36.733488476841075 38.0 35.0 40.0 33.0 41.0 26 36.706223256512274 38.0 35.0 40.0 33.0 41.0 27 36.631679303355604 38.0 35.0 40.0 33.0 41.0 28 36.556970197432626 38.0 35.0 40.0 33.0 41.0 29 36.38831919525561 38.0 35.0 40.0 32.0 41.0 30 36.07463403648375 38.0 35.0 40.0 31.0 41.0 31 35.573410404624276 37.0 35.0 40.0 30.0 41.0 32 35.21111027700623 38.0 35.0 40.0 27.0 41.0 33 34.63848059454996 38.0 35.0 40.0 22.0 41.0 34 34.10808497860521 38.0 34.0 40.0 18.0 41.0 35 33.78949027850762 37.0 34.0 40.0 16.0 41.0 36 33.50014263193454 37.0 33.0 40.0 15.0 41.0 37 33.22070415133999 37.0 33.0 40.0 12.0 41.0 38 33.02998273402898 37.0 33.0 40.0 10.0 41.0 39 32.95516853089107 37.0 33.0 40.0 10.0 41.0 40 32.679168230613314 37.0 32.0 40.0 10.0 41.0 41 32.53192703250507 36.0 32.0 40.0 10.0 41.0 42 32.4168455821635 37.0 31.0 40.0 10.0 41.0 43 32.35638465580662 37.0 31.0 40.0 10.0 41.0 44 32.22840627580512 36.0 31.0 40.0 10.0 41.0 45 32.1270024772915 36.0 31.0 40.0 10.0 41.0 46 31.799924930560767 35.0 30.0 40.0 10.0 41.0 47 31.664439606636137 35.0 30.0 39.0 10.0 41.0 48 31.615299151715337 35.0 30.0 39.0 9.0 41.0 49 31.677336536296075 35.0 30.0 39.0 8.0 41.0 50 31.523759477516702 35.0 30.0 39.0 8.0 41.0 51 30.703881090008256 35.0 28.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 0.0 12 2.0 13 4.0 14 4.0 15 3.0 16 5.0 17 16.0 18 31.0 19 48.0 20 91.0 21 139.0 22 244.0 23 459.0 24 669.0 25 1287.0 26 1991.0 27 2334.0 28 2103.0 29 2071.0 30 1846.0 31 2002.0 32 2160.0 33 2595.0 34 3813.0 35 5554.0 36 7178.0 37 7882.0 38 12615.0 39 9454.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.86772764807447 4.930560768711058 36.36213497485174 36.839576608362734 2 42.189024847984385 4.7413857818482095 36.578334959837846 16.491254410329557 3 17.836498761354253 5.703775992793334 59.618647248705045 16.841077997147362 4 14.673072592147737 4.957585766834321 59.48202086930411 20.887320771713835 5 11.063733953907365 6.526537046768261 61.565948502364684 20.84378049695969 6 16.046843330080325 7.3282786577584265 64.89602882666466 11.728849185496584 7 58.25538623226485 3.1258914495908714 33.823286540049544 4.795435778094738 8 56.68793634111553 3.2895428271150813 33.71518654755649 6.307334284212897 9 52.70325050671871 4.835973275279634 36.06636138428046 6.394414833721192 10 25.76833571053224 17.33953907364312 41.20861797162375 15.683507244200886 11 16.11290443660386 15.449290593799264 46.110652353426914 22.327152616169958 12 14.405825388484347 13.038060205690263 53.152165753321825 19.403948652503566 13 17.63831544178365 14.371293446437955 54.43134899782298 13.559042113955408 14 15.431273928383755 16.770512724269953 51.987088056452215 15.811125290894076 15 11.129795060430899 15.417761429322125 54.27070039786803 19.181743112378953 16 11.548682531341491 15.01388784625779 51.05022145484573 22.387208167554988 17 11.407551985586668 15.542376698446061 48.81014938818407 24.2399219277832 18 12.422490803993695 14.33075594925306 52.417986637639814 20.82876660911343 19 13.173185196306584 17.031754372794836 52.375947751670296 17.419112679228284 20 13.488476841077999 19.48802642444261 50.3490728924255 16.6744238420539 21 13.185196306583592 20.860295773590572 49.60138127768185 16.353126642143984 22 11.15381728098491 19.120186172209294 48.0549508295173 21.671045717288493 23 11.605735305157271 20.22370692890924 45.42752045642219 22.743037309511298 24 13.21372269349148 19.340890323549285 45.741310712408975 21.70407627055026 25 12.586142181517904 21.06448464829968 43.2790331056227 23.07034006455972 26 12.329404699346897 21.926281810674876 44.93956910141881 20.804744388559417 27 13.434426844831467 20.846783274528942 46.355378725320925 19.36341115531867 28 11.707829742511823 19.00758201336236 46.9304106298326 22.35417761429322 29 14.558967044516177 18.024172359432473 44.789430222956234 22.627430373095116 30 19.588619473012535 19.600630583289544 42.1079498536146 18.702800090083326 31 17.56624878012161 26.577584265445537 36.615869679453496 19.240297274979355 32 16.438705802867652 27.021995345694766 34.57398093236244 21.965317919075144 33 18.45206816305082 21.57495683507244 34.495908715561896 25.47706628631484 34 18.912994519930937 22.851137302004354 34.519930936115905 23.715937241948804 35 20.747691614743637 22.594399819833345 32.11470610314541 24.54320246227761 36 22.165002627430372 23.170933113129642 31.63876585841904 23.025298401020944 37 16.36513775242099 29.61489377674349 31.979581112529086 22.040387358306436 38 17.03325576157946 32.785826889873135 30.07732152240823 20.103595826139177 39 22.457773440432398 26.304331506643646 31.29644921552436 19.941445837399595 40 23.085353952405978 26.42744538698296 31.98408527888297 18.5031153817281 41 17.728398768861197 29.85962014863749 29.754522933713684 22.65745814878763 42 17.597777944598754 26.66466481495383 31.177839501538923 24.55971773890849 43 17.81247654080024 22.279108175061932 35.13550033781247 24.77291494632535 44 19.147211170332557 21.914270700397868 34.537947601531414 24.400570527738157 45 22.72802342166504 20.490954132572632 32.806846332857894 23.974176112904434 46 23.148412281360258 22.298626229262066 35.8651752871406 18.68778620223707 47 15.929735004879515 26.446963441183097 38.63073342842129 18.9925681255161 48 15.407251707829742 24.293971924029726 39.345394489903164 20.95338187823737 49 20.022520831769384 18.906988964792433 40.44741385781848 20.623076345619697 50 19.433976428196083 16.965693266271302 37.597777944598754 26.002552360933862 51 17.39208768110502 16.838075219578112 35.462803092860895 30.307034006455975 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 214.0 1 408.0 2 602.0 3 3667.5 4 6733.0 5 4173.5 6 1614.0 7 1477.0 8 1340.0 9 1293.0 10 1246.0 11 1192.5 12 1139.0 13 1067.0 14 995.0 15 897.5 16 800.0 17 726.5 18 653.0 19 581.5 20 510.0 21 477.5 22 445.0 23 442.5 24 440.0 25 417.0 26 378.5 27 363.0 28 357.5 29 352.0 30 399.0 31 446.0 32 465.0 33 484.0 34 556.0 35 628.0 36 683.5 37 739.0 38 849.5 39 960.0 40 1221.0 41 1482.0 42 1953.0 43 2424.0 44 2822.0 45 3220.0 46 4203.0 47 5186.0 48 6732.0 49 8278.0 50 8245.0 51 8212.0 52 6806.0 53 5400.0 54 4139.5 55 2879.0 56 2384.0 57 1889.0 58 1673.5 59 1458.0 60 1302.5 61 1147.0 62 1137.5 63 1128.0 64 1007.0 65 886.0 66 764.5 67 643.0 68 537.5 69 432.0 70 373.5 71 315.0 72 274.5 73 234.0 74 190.5 75 115.5 76 84.0 77 56.0 78 28.0 79 25.0 80 22.0 81 15.0 82 8.0 83 6.5 84 5.0 85 3.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 66605.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.87673598078223 #Duplication Level Percentage of deduplicated Percentage of total 1 80.29505253196807 49.68395766083628 2 11.341081697522625 14.03498235868178 3 4.137044136558853 7.679603633360858 4 1.737315895469876 4.299977479168231 5 0.8079974765243976 2.499812326401922 6 0.43918181156431224 1.6305082201035956 7 0.24749472253900467 1.071991592222806 8 0.22080411520636695 1.093011035207567 9 0.1164681047242375 0.6485999549583366 >10 0.5968990367117172 6.292320396366639 >50 0.038822701574745835 1.568951279933939 >100 0.019411350787372918 2.6904887020493957 >500 0.0 0.0 >1k 0.0024264188484216147 6.805795360708656 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4533 6.805795360708656 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCC 346 0.5194805194805194 No Hit CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT 317 0.4759402447263719 Illumina Single End Adapter 1 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC 297 0.44591246903385634 Illumina Single End Adapter 1 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC 218 0.32730275504841977 Illumina Single End Adapter 1 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC 207 0.31078747841753623 Illumina Single End Adapter 1 (95% over 24bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGC 175 0.2627430373095113 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 121 0.18166804293971925 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 111 0.16665415509346143 No Hit GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 96 0.14413332332407477 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 88 0.13212221304706853 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 86 0.12911943547781699 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 76 0.1141055476315592 No Hit CGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG 74 0.11110277006230763 Illumina Single End Adapter 1 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG 67 0.10059304856992718 Illumina Single End Adapter 1 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0015013887846257788 0.0 0.0 0.5059680204188874 0.0 2 0.0015013887846257788 0.0 0.0 1.7130846032580136 0.0 3 0.0015013887846257788 0.0 0.0 2.3797012236318595 0.0 4 0.0015013887846257788 0.0 0.0 3.412656707454395 0.0 5 0.0015013887846257788 0.0 0.0 5.519105172284363 0.0 6 0.0015013887846257788 0.0 0.0 7.053524510171909 0.0 7 0.0015013887846257788 0.0 0.0 8.463328578935515 0.0 8 0.0015013887846257788 0.0 0.0 10.62082426244276 0.0 9 0.0015013887846257788 0.0 0.0 11.494632535094963 0.0 10 0.0015013887846257788 0.0 0.0 13.952405975527363 0.0 11 0.0015013887846257788 0.0 0.0 19.777794459875384 0.0 12 0.0015013887846257788 0.0 0.0 25.073192703250506 0.0 13 0.0015013887846257788 0.0 0.0 26.723218977554236 0.0 14 0.0015013887846257788 0.0 0.0 27.25921477366564 0.0 15 0.0015013887846257788 0.0 0.0 28.101493881840703 0.0 16 0.0015013887846257788 0.0 0.0 30.09383679903911 0.0 17 0.0015013887846257788 0.0 0.0 32.63718940019518 0.0 18 0.0015013887846257788 0.0 0.0 34.89978229862623 0.0 19 0.0015013887846257788 0.0 0.0 36.20899331881991 0.0 20 0.0015013887846257788 0.0 0.0 37.369566849335634 0.0 21 0.0015013887846257788 0.0 0.0 38.686284813452446 0.0 22 0.0015013887846257788 0.0 0.0 39.72674724119811 0.0 23 0.0015013887846257788 0.0 0.0 40.59154718114256 0.0 24 0.0030027775692515577 0.0 0.0 41.04346520531492 0.0 25 0.0030027775692515577 0.0 0.0 41.339238795886196 0.0 26 0.0030027775692515577 0.0 0.0 41.541926281810674 0.0 27 0.0030027775692515577 0.0 0.0 41.71758876961189 0.0 28 0.0030027775692515577 0.0 0.0 41.90976653404399 0.0 29 0.0030027775692515577 0.0 0.0 42.11095263118384 0.0 30 0.0030027775692515577 0.0 0.0 42.24307484423091 0.0 31 0.0030027775692515577 0.0 0.0 42.39021094512424 0.0 32 0.0030027775692515577 0.0 0.0 42.51482621424818 0.0 33 0.0030027775692515577 0.0 0.0 42.6499512048645 0.0 34 0.0030027775692515577 0.0 0.0 42.77907064034232 0.0 35 0.0030027775692515577 0.0 0.0 42.900683131897004 0.0 36 0.0030027775692515577 0.0 0.0 43.03730951129795 0.0 37 0.0030027775692515577 0.0 0.0 43.15441783649876 0.0 38 0.0030027775692515577 0.0 0.0 43.28353727197658 0.0 39 0.0030027775692515577 0.0 0.0 43.41415809623902 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCTCTG 20 6.9854734E-4 45.0 1 AATTCGA 20 6.9854734E-4 45.0 13 TGATTGG 25 3.8512288E-5 45.0 2 AGGGCCT 35 1.189037E-7 45.0 6 AGGGTCT 20 6.9854734E-4 45.0 6 GTATTGG 20 6.9854734E-4 45.0 2 CTAGGGT 20 6.9854734E-4 45.0 4 TCCGGGC 20 6.9854734E-4 45.0 4 GTCTTTG 20 6.9854734E-4 45.0 1 TCGTTTG 25 3.8512288E-5 45.0 1 CGAGCTC 20 6.9854734E-4 45.0 17 GAATTCG 20 6.9854734E-4 45.0 12 GGGACAT 20 6.9854734E-4 45.0 7 CGGTTTT 20 6.9854734E-4 45.0 1 TGGGACA 45 3.7289283E-10 45.0 6 TCGAGCT 20 6.9854734E-4 45.0 16 TGCGGGC 20 6.9854734E-4 45.0 4 TTACGGG 20 6.9854734E-4 45.0 3 TATTGGG 30 2.1347423E-6 44.999996 3 CGTTTTT 1490 0.0 44.395973 1 >>END_MODULE