SRR2933673.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933673.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	121255
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8563	7.061976825697909	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCC	943	0.777699888664385	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	793	0.6539936497464022	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	766	0.6317265267411654	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	503	0.4148282545049689	No Hit
TCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	500	0.41235412972660923	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	469	0.38678817368355944	No Hit
GTGTTTGTGTGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	233	0.19215702445259988	No Hit
TCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	219	0.18061110882025483	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG	194	0.15999340233392437	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	166	0.13690157106923426	No Hit
GGCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	162	0.13360273803142136	No Hit
GCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	161	0.13277802977196815	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	151	0.12453094717743599	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	151	0.12453094717743599	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	145	0.11958269762071666	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	124	0.10226382417219909	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGGTT	45	3.783498E-10	45.000004	4
TGGGTCC	35	1.199951E-7	45.000004	6
TGGGTAC	35	1.199951E-7	45.000004	6
TAGGGGC	45	3.783498E-10	45.000004	5
TCCCTTG	35	1.199951E-7	45.000004	1
GCGGGCT	25	3.870127E-5	45.0	5
TGTTGCG	25	3.870127E-5	45.0	1
GGGTCAT	20	7.0083217E-4	45.0	7
GGCACCG	20	7.0083217E-4	45.0	8
TCCTAGG	25	3.870127E-5	45.0	2
CGCTTGG	20	7.0083217E-4	45.0	2
GGCGATG	55	1.8189894E-12	45.0	8
GGATTAT	20	7.0083217E-4	45.0	8
CGTGGGC	20	7.0083217E-4	45.0	4
CGGGCGA	25	3.870127E-5	45.0	6
CGGGTCT	20	7.0083217E-4	45.0	6
TTCCTAG	20	7.0083217E-4	45.0	1
TCTGCAC	25	3.870127E-5	45.0	10
GGGATGA	25	3.870127E-5	45.0	7
TGGGCCG	20	7.0083217E-4	45.0	6