SRR2933672.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933672.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	424150
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10470	2.4684663444536135	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCC	1626	0.3833549451844866	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC	795	0.18743369091123424	No Hit
CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT	691	0.16291406342095957	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	660	0.15560532830366616	TruSeq Adapter, Index 13 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	552	0.1301426382176117	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACACG	20	7.028247E-4	45.000004	9
CTATCGG	20	7.028247E-4	45.000004	2
AGGCACG	20	7.028247E-4	45.000004	10
CGTTTTT	6995	0.0	43.713364	1
GCGATCT	150	0.0	42.0	9
CGTTTGG	205	0.0	40.609756	2
GCGCGAC	50	1.0786607E-9	40.5	9
GCCGATT	45	1.9233994E-8	40.0	9
TGCGGGA	370	0.0	39.527027	4
ACAAGCG	245	0.0	39.489796	14
TTACGGG	80	0.0	39.375004	3
GCGGGAT	155	0.0	39.193546	5
TGGGCGA	590	0.0	38.898304	6
GTTTTTT	8295	0.0	38.598553	2
CGGGTAC	35	6.2389718E-6	38.571426	6
CCGCTTG	35	6.2389718E-6	38.571426	1
CTACGGG	35	6.2389718E-6	38.571426	3
TTGGGAC	750	0.0	37.8	5
CGGGTGC	30	1.13870745E-4	37.500004	6
CGGGTAG	60	1.546141E-10	37.500004	6