SRR2933671.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933671.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	425990
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10422	2.4465363036691	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCC	1614	0.37888213338341276	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC	778	0.1826333951501209	No Hit
CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT	689	0.16174088593628957	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	663	0.1556374562783164	TruSeq Adapter, Index 13 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	544	0.12770252822836217	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	25	3.8866565E-5	45.000004	1
GCCGATC	30	2.1622727E-6	45.000004	9
TACGCGC	20	7.0282805E-4	45.000004	34
ATACGCG	20	7.0282805E-4	45.000004	33
TGTCGTG	20	7.0282805E-4	45.000004	1
ATTTCGC	20	7.0282805E-4	45.000004	12
CGTTTTT	6430	0.0	43.74028	1
CGCGGGA	85	0.0	42.35294	4
TGTTGCG	85	0.0	42.35294	1
GCCGATT	85	0.0	42.35294	9
GGCCGAT	165	0.0	42.272728	8
ACACGCG	150	0.0	42.0	36
TTACACG	150	0.0	42.0	34
TACGGGA	60	3.6379788E-12	41.250004	4
CGGGTAT	105	0.0	40.714287	6
TTGTGCG	50	1.0786607E-9	40.500004	1
GGGCCGA	175	0.0	39.857143	7
TGGGCGA	615	0.0	39.14634	6
CTTTGCG	185	0.0	38.91892	1
CGGGTCC	70	0.0	38.571426	6