##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933671.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 425990 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13666283246086 33.0 31.0 34.0 30.0 34.0 2 32.35382990211038 34.0 31.0 34.0 30.0 34.0 3 32.49440127702528 34.0 31.0 34.0 31.0 34.0 4 35.96638888236813 37.0 35.0 37.0 35.0 37.0 5 36.044576163759714 37.0 35.0 37.0 35.0 37.0 6 36.03861358247846 37.0 35.0 37.0 35.0 37.0 7 36.06237470363154 37.0 35.0 37.0 35.0 37.0 8 35.98350900255875 37.0 35.0 37.0 35.0 37.0 9 37.82997018709359 39.0 38.0 39.0 35.0 39.0 10 37.11821404258316 39.0 37.0 39.0 33.0 39.0 11 37.10112209206789 39.0 37.0 39.0 34.0 39.0 12 37.1828235404587 39.0 37.0 39.0 34.0 39.0 13 37.241660602361556 39.0 37.0 39.0 34.0 39.0 14 38.49787553698444 40.0 38.0 41.0 34.0 41.0 15 38.51485011385244 40.0 38.0 41.0 34.0 41.0 16 38.6087537266133 40.0 38.0 41.0 34.0 41.0 17 38.59615953426137 40.0 38.0 41.0 34.0 41.0 18 38.346073851498865 39.0 38.0 41.0 34.0 41.0 19 38.093046785135805 39.0 37.0 41.0 34.0 41.0 20 37.67344538604193 39.0 35.0 41.0 34.0 41.0 21 37.578248315688164 39.0 35.0 41.0 34.0 41.0 22 37.56153196084415 39.0 35.0 41.0 34.0 41.0 23 37.43686941008005 39.0 35.0 41.0 33.0 41.0 24 37.33377778821099 39.0 35.0 41.0 33.0 41.0 25 37.2693983426841 39.0 35.0 41.0 33.0 41.0 26 37.23644451747693 39.0 35.0 41.0 33.0 41.0 27 37.17062607103453 39.0 35.0 41.0 33.0 41.0 28 37.084741425855064 39.0 35.0 41.0 33.0 41.0 29 36.855562337144065 39.0 35.0 41.0 33.0 41.0 30 36.58317096645461 39.0 35.0 41.0 31.0 41.0 31 36.25254113946337 39.0 35.0 41.0 30.0 41.0 32 35.85971736425738 39.0 35.0 41.0 28.0 41.0 33 35.285687457452056 39.0 35.0 41.0 23.0 41.0 34 34.83552665555529 39.0 35.0 41.0 18.0 41.0 35 34.55193549144346 39.0 35.0 41.0 17.0 41.0 36 34.38171553322848 39.0 35.0 41.0 15.0 41.0 37 34.30679593417686 39.0 34.0 41.0 15.0 41.0 38 34.21698161928684 39.0 34.0 41.0 15.0 41.0 39 34.192812037841264 39.0 34.0 41.0 15.0 41.0 40 34.04539073687176 39.0 34.0 41.0 13.0 41.0 41 33.92469306791239 38.0 34.0 41.0 12.0 41.0 42 33.758130472546306 38.0 33.0 41.0 10.0 41.0 43 33.69910561280781 38.0 33.0 41.0 10.0 41.0 44 33.50257752529402 38.0 33.0 40.0 10.0 41.0 45 33.44308082349351 38.0 33.0 40.0 10.0 41.0 46 33.23165097772248 38.0 33.0 40.0 10.0 41.0 47 33.19239653512993 38.0 33.0 40.0 10.0 41.0 48 33.08256766590765 38.0 33.0 40.0 10.0 41.0 49 33.07036315406465 38.0 33.0 40.0 10.0 41.0 50 32.903518861945116 37.0 32.0 40.0 10.0 41.0 51 32.04635789572525 36.0 30.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 7.0 10 8.0 11 6.0 12 4.0 13 12.0 14 14.0 15 17.0 16 43.0 17 79.0 18 141.0 19 296.0 20 500.0 21 892.0 22 1559.0 23 2683.0 24 5032.0 25 9199.0 26 12692.0 27 12854.0 28 10797.0 29 9218.0 30 8778.0 31 9194.0 32 10487.0 33 13415.0 34 20357.0 35 26734.0 36 33996.0 37 46778.0 38 85031.0 39 105127.0 40 39.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.93058522500528 5.005986056010705 41.21599098570389 30.847437733280124 2 34.89518533298904 4.7339139416418226 44.88110049531679 15.489800230052348 3 18.840113617690555 4.857860513157586 59.43402427287025 16.868001596281605 4 14.90856592877767 4.922885513744454 59.77745956477851 20.39108899269936 5 13.590225122655461 5.630179112185732 61.36622925420785 19.41336651095096 6 17.664733913941642 6.654616305547078 62.54090471607314 13.139745064438133 7 70.71292753351017 2.0258691518580245 23.93013920514566 3.3310641094861384 8 71.99910796028077 2.1047442428226013 22.298645508110518 3.5975022887861217 9 66.83419798586822 4.785558346440057 24.006666823164863 4.373576844526867 10 29.342707575295197 20.708702082208504 33.22120237564262 16.727387966853684 11 20.77278809361722 22.411558956783022 36.917063780839925 19.89858916875983 12 17.05274771708256 20.509166881851687 43.25406699687786 19.184018404187892 13 18.957722012253807 20.481231953801732 45.11232658043616 15.448719453508296 14 18.631658020141316 21.61130542970492 44.081316462827765 15.675720087325992 15 15.97666611892298 21.847226460715042 45.06537712152868 17.110730298833307 16 16.657668020376065 20.917392427052278 42.973543979905635 19.451395572666026 17 17.081621634310665 21.1345336744994 41.31223737646423 20.4716073147257 18 18.273433648677198 19.661729148571563 42.87495011619991 19.189887086551327 19 17.866381839949295 23.066503908542455 41.87281391581962 17.19430033568863 20 19.227681400971854 23.098429540599543 40.56433249606798 17.10955656236062 21 18.3957369891312 24.464189300218315 40.828657949717126 16.311415760933357 22 17.410267846663068 22.490199300453064 39.9561022559215 20.143430596962368 23 16.779267118946454 23.838587760276063 38.78612173994695 20.596023380830538 24 16.59710321838541 23.889762670485222 39.54787671072091 19.965257400408458 25 16.341698161928683 25.865161154017702 37.78140331932674 20.011737364726873 26 15.858118735181579 26.63982722599122 38.629545294490484 18.87250874433672 27 16.251085706237237 25.42031503086927 39.62158736120566 18.707011901687835 28 15.415385337683984 24.240240381229604 39.95657175051058 20.387802530575836 29 16.887250874433672 23.41768586117045 38.518744571468815 21.176318692927065 30 19.24082724946595 24.093288574849176 37.12105917979295 19.544824995891922 31 18.355360454470762 26.654146810958 34.84095870795089 20.149534026620344 32 16.814948707716145 26.562125871499333 34.63414634146341 21.988779079321112 33 19.659616422920724 24.34705040024414 32.35827132092302 23.63506185591211 34 18.444564426394987 25.513040212211553 32.53128007699711 23.511115284396347 35 17.98258175074532 26.90274419587314 31.25402004741895 23.86065400596258 36 18.938237986807202 27.61567172938332 30.999553980140377 22.446536303669102 37 17.86497335618207 26.29967839620648 33.46487006737247 22.370478180238972 38 18.92743961125848 25.709523697739385 32.373060400478884 22.989976290523252 39 21.984788375313975 24.103852203103358 30.53616282072349 23.375196600859173 40 21.927744782741378 24.808094086715652 30.634052442545602 22.63010868799737 41 18.469917134205026 25.703889762670485 32.33315336040752 23.493039742716963 42 18.131646282776593 26.267048522265778 34.929693185286034 20.671612009671588 43 18.43752200755886 24.394704101035238 35.767975774079204 21.3997981173267 44 19.89671119040353 24.50386159299514 31.98408413343036 23.615343083170966 45 21.664827812859457 23.68248080940867 30.241789713373553 24.410901664358317 46 21.540881241343694 24.381088757952067 31.90826075729477 22.16976924340947 47 18.368271555670322 26.049907274818658 34.61325383224958 20.968567337261437 48 18.22225873846804 25.11396981149792 35.440972792788564 21.222798657245477 49 20.874668419446465 23.281062935749667 34.528979553510645 21.315289091293224 50 20.08756074086246 22.57916852508275 32.8014742130097 24.531796521045095 51 19.23542806169159 22.18807953238339 31.806380431465524 26.770111974459493 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 506.0 1 1055.5 2 1605.0 3 10067.0 4 18529.0 5 12434.0 6 6339.0 7 6138.0 8 5937.0 9 5925.5 10 5914.0 11 5830.5 12 5747.0 13 5589.5 14 5432.0 15 5175.5 16 4919.0 17 4824.5 18 4730.0 19 4485.5 20 4241.0 21 4128.0 22 4015.0 23 4012.0 24 4009.0 25 4039.5 26 4291.5 27 4513.0 28 4858.0 29 5203.0 30 5766.0 31 6329.0 32 7326.0 33 8323.0 34 9453.5 35 10584.0 36 11690.0 37 12796.0 38 14551.5 39 16307.0 40 17572.0 41 18837.0 42 20989.0 43 23141.0 44 25041.5 45 26942.0 46 30770.0 47 34598.0 48 38146.0 49 41694.0 50 40309.0 51 38924.0 52 33581.0 53 28238.0 54 23953.0 55 19668.0 56 16657.0 57 13646.0 58 12484.0 59 11322.0 60 10002.0 61 8682.0 62 7393.0 63 6104.0 64 5444.0 65 4784.0 66 4007.0 67 3230.0 68 2585.0 69 1940.0 70 1687.5 71 1435.0 72 1258.0 73 1081.0 74 953.0 75 658.5 76 492.0 77 339.5 78 187.0 79 133.5 80 80.0 81 70.0 82 60.0 83 39.5 84 19.0 85 13.0 86 7.0 87 5.5 88 4.0 89 3.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 425990.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.888111452744816 #Duplication Level Percentage of deduplicated Percentage of total 1 74.99243806931143 36.662386704455606 2 9.989709222394218 9.767560356898425 3 4.560519410639555 6.68865543689258 4 2.755856601903755 5.389144988066135 5 1.8451001809627559 4.510173164419342 6 1.2486373504542052 3.6626113171839108 7 0.9263044323657182 3.169969203006673 8 0.7306956377095738 2.8577863819504077 9 0.5291870395908171 2.3283859473777557 >10 2.3433285931847254 18.0155626091254 >50 0.05408041781564659 1.811064303103037 >100 0.02124587842753137 1.6642340115818575 >500 0.0019314434934119425 0.6312286165914733 >1k 4.8286087335298563E-4 0.3810033609493785 >5k 0.0 0.0 >10k+ 4.8286087335298563E-4 2.4602335983980312 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10422 2.4465363036691 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCC 1614 0.37888213338341276 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC 778 0.1826333951501209 No Hit CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT 689 0.16174088593628957 TruSeq Adapter, Index 16 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC 663 0.1556374562783164 TruSeq Adapter, Index 13 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC 544 0.12770252822836217 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.694945890748609E-4 0.0 0.0 0.17300875607408625 0.0 2 4.694945890748609E-4 0.0 0.0 0.5899199511725627 0.0 3 4.694945890748609E-4 0.0 0.0 0.8476724805746614 0.0 4 4.694945890748609E-4 0.0 0.0 1.2817202281743703 0.0 5 4.694945890748609E-4 0.0 0.0 2.2876123852672596 0.0 6 7.042418836122914E-4 0.0 0.0 3.3646329726049906 0.0 7 7.042418836122914E-4 0.0 0.0 4.262306626916125 0.0 8 7.042418836122914E-4 0.0 0.0 5.596375501772342 0.0 9 7.042418836122914E-4 0.0 0.0 6.26892650062208 0.0 10 9.389891781497219E-4 0.0 0.0 7.68773914880631 0.0 11 9.389891781497219E-4 0.0 0.0 10.87795488156999 0.0 12 9.389891781497219E-4 0.0 0.0 13.585060682175637 0.0 13 9.389891781497219E-4 0.0 0.0 14.54517711683373 0.0 14 9.389891781497219E-4 0.0 0.0 14.898471795112561 0.0 15 9.389891781497219E-4 0.0 0.0 15.317730463156412 0.0 16 0.0011737364726871523 0.0 0.0 16.453203126833962 0.0 17 0.0011737364726871523 0.0 0.0 17.97999953050541 0.0 18 0.0011737364726871523 0.0 0.0 19.488720392497477 0.0 19 0.0011737364726871523 0.0 0.0 20.40564332496068 0.0 20 0.0011737364726871523 0.0 0.0 21.187351815770324 0.0 21 0.0014084837672245828 0.0 0.0 22.167421770464095 0.0 22 0.0014084837672245828 0.0 0.0 23.01931970234043 0.0 23 0.0014084837672245828 0.0 0.0 23.658301838071317 0.0 24 0.0014084837672245828 0.0 0.0 24.081316462827765 0.0 25 0.0014084837672245828 0.0 0.0 24.39540834291885 0.0 26 0.0014084837672245828 0.0 0.0 24.63179886851804 0.0 27 0.0014084837672245828 0.0 0.0 24.848470621376087 0.0 28 0.0014084837672245828 0.0 0.0 25.05856944998709 0.0 29 0.0014084837672245828 0.0 0.0 25.30599309842954 0.0 30 0.0014084837672245828 0.0 0.0 25.538862414610673 0.0 31 0.0016432310617620132 0.0 0.0 25.771262236202727 0.0 32 0.0018779783562994437 0.0 0.0 26.029953754782976 0.0 33 0.0018779783562994437 0.0 0.0 26.254841662949836 0.0 34 0.0018779783562994437 0.0 0.0 26.446630202586917 0.0 35 0.0018779783562994437 0.0 0.0 26.65532054743069 0.0 36 0.0018779783562994437 0.0 0.0 26.859315946383717 0.0 37 0.0018779783562994437 0.0 0.0 27.09852343951736 0.0 38 0.0018779783562994437 0.0 0.0 27.334913965116552 0.0 39 0.0018779783562994437 0.0 0.0 27.58538932838799 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 25 3.8866565E-5 45.000004 1 GCCGATC 30 2.1622727E-6 45.000004 9 TACGCGC 20 7.0282805E-4 45.000004 34 ATACGCG 20 7.0282805E-4 45.000004 33 TGTCGTG 20 7.0282805E-4 45.000004 1 ATTTCGC 20 7.0282805E-4 45.000004 12 CGTTTTT 6430 0.0 43.74028 1 CGCGGGA 85 0.0 42.35294 4 TGTTGCG 85 0.0 42.35294 1 GCCGATT 85 0.0 42.35294 9 GGCCGAT 165 0.0 42.272728 8 ACACGCG 150 0.0 42.0 36 TTACACG 150 0.0 42.0 34 TACGGGA 60 3.6379788E-12 41.250004 4 CGGGTAT 105 0.0 40.714287 6 TTGTGCG 50 1.0786607E-9 40.500004 1 GGGCCGA 175 0.0 39.857143 7 TGGGCGA 615 0.0 39.14634 6 CTTTGCG 185 0.0 38.91892 1 CGGGTCC 70 0.0 38.571426 6 >>END_MODULE