##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933667.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 80660 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.96652615918671 33.0 31.0 34.0 30.0 34.0 2 32.18446565831887 34.0 31.0 34.0 30.0 34.0 3 32.242201834862385 33.0 31.0 34.0 30.0 34.0 4 35.83282915943467 37.0 35.0 37.0 35.0 37.0 5 35.92728737912224 37.0 35.0 37.0 35.0 37.0 6 35.928874287131165 37.0 35.0 37.0 35.0 37.0 7 35.872762211753034 37.0 35.0 37.0 35.0 37.0 8 35.72675427721299 37.0 35.0 37.0 35.0 37.0 9 37.54237540292586 39.0 37.0 39.0 35.0 39.0 10 37.219600793454006 39.0 37.0 39.0 34.0 39.0 11 37.21929085048351 39.0 37.0 39.0 34.0 39.0 12 37.24789238780065 39.0 37.0 39.0 34.0 39.0 13 37.23177535333499 39.0 37.0 39.0 34.0 39.0 14 38.440354574758246 40.0 38.0 41.0 34.0 41.0 15 38.41596826183982 40.0 38.0 41.0 34.0 41.0 16 38.5431564592115 40.0 38.0 41.0 34.0 41.0 17 38.53481279444582 40.0 38.0 41.0 34.0 41.0 18 38.14035457475824 39.0 38.0 40.0 34.0 41.0 19 37.653967270022314 38.0 37.0 40.0 34.0 41.0 20 36.96686089759484 38.0 35.0 40.0 34.0 41.0 21 36.863612695264074 38.0 35.0 40.0 33.0 41.0 22 36.87686585668237 38.0 35.0 40.0 33.0 41.0 23 36.75421522439871 38.0 35.0 40.0 33.0 41.0 24 36.66102157203075 37.0 35.0 40.0 33.0 41.0 25 36.54490453756509 37.0 35.0 40.0 33.0 41.0 26 36.5254401190181 37.0 35.0 40.0 33.0 41.0 27 36.44957847756013 37.0 35.0 40.0 33.0 41.0 28 36.40073146541037 37.0 35.0 40.0 33.0 41.0 29 36.19266055045872 37.0 35.0 40.0 32.0 41.0 30 35.89859905777337 37.0 35.0 40.0 31.0 41.0 31 35.400322340689314 37.0 35.0 40.0 29.0 41.0 32 34.85022315893875 37.0 35.0 40.0 24.0 41.0 33 34.10347136126953 37.0 34.0 40.0 20.0 41.0 34 33.47577485742623 37.0 33.0 40.0 15.0 41.0 35 33.06399702454748 37.0 33.0 40.0 12.0 41.0 36 32.76646417059261 37.0 33.0 40.0 10.0 41.0 37 32.488544507810566 36.0 32.0 40.0 10.0 41.0 38 32.22785767418795 36.0 31.0 40.0 10.0 41.0 39 32.179816513761466 36.0 31.0 40.0 10.0 41.0 40 31.99390032234069 35.0 31.0 40.0 10.0 41.0 41 31.941296801388546 36.0 31.0 40.0 10.0 41.0 42 31.627808083312672 35.0 29.0 40.0 8.0 41.0 43 31.255913711877014 35.0 28.0 40.0 8.0 41.0 44 30.979556161666252 35.0 27.0 39.0 8.0 41.0 45 31.099640466154227 35.0 28.0 39.0 8.0 41.0 46 30.960352095214482 35.0 26.0 39.0 8.0 41.0 47 30.91133151500124 35.0 26.0 39.0 8.0 41.0 48 30.796045127696505 35.0 26.0 39.0 8.0 41.0 49 30.790614926853458 35.0 27.0 39.0 8.0 41.0 50 30.592251425737665 35.0 26.0 39.0 8.0 41.0 51 29.801078601537316 35.0 24.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 2.0 12 1.0 13 1.0 14 3.0 15 9.0 16 11.0 17 26.0 18 39.0 19 90.0 20 131.0 21 213.0 22 347.0 23 553.0 24 987.0 25 1746.0 26 2812.0 27 3114.0 28 2959.0 29 2693.0 30 2650.0 31 2521.0 32 2818.0 33 3279.0 34 4552.0 35 6727.0 36 8876.0 37 8938.0 38 14089.0 39 10466.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.25291346392264 4.889660302504339 33.69452020828167 41.16290602529135 2 44.871063724274734 4.89337961815026 34.18918918918919 16.046367468385817 3 16.82494421026531 5.5504587155963305 61.14554921894372 16.479047855194644 4 13.52963054797917 5.131415819489214 62.108851971237286 19.23010166129432 5 10.975700471113315 6.22737416315398 63.10190924869824 19.695016117034466 6 14.787999008182496 7.076617902305976 66.47904785519464 11.656335234316886 7 54.26977436151748 3.250681874535086 37.59980163649889 4.87974212744855 8 52.81552194396231 3.5841805107860156 37.25142573766427 6.348871807587404 9 48.19985122737416 5.585172328291595 39.66402181998512 6.55095462434912 10 24.101165385569058 17.33077113811059 44.181750557897345 14.38631291842301 11 15.829407389040417 15.050830647160923 48.99206545995537 20.127696503843293 12 14.024299528886687 13.039920654599554 54.28961071162905 18.646169104884702 13 17.00843044879742 14.21274485494669 55.63724274733449 13.141581948921399 14 15.399206545995536 15.929828911480287 53.77138606496404 14.89957847756013 15 11.212496900570295 15.42400198363501 56.10587651872056 17.25762459707414 16 11.027770890156212 14.568559385073145 52.840317381601785 21.563352343168855 17 11.108356062484503 15.26655095462435 51.43565583932557 22.189437143565584 18 12.04066451772874 14.101165385569056 54.48797421274485 19.370195883957354 19 12.570047111331514 16.518720555417804 54.49417307215473 16.41705926109596 20 13.137862633275477 18.668484998760228 52.12372923382098 16.06992313414332 21 12.470865360773619 20.3396974956608 51.90428961071163 15.285147532853955 22 10.994297049342922 18.26927845276469 50.72526655095463 20.011157946937765 23 11.125712868832135 19.505331019092488 48.43044879742128 20.938507314654103 24 12.46466650136375 18.760228118026284 48.22588643689561 20.549218943714358 25 11.522439871063725 20.454996280684355 46.29184230101661 21.73072154723531 26 11.728242003471362 20.502107612199357 47.98289114802876 19.786759236300522 27 12.860153731713364 19.98264319365237 49.17307215472353 17.984130919910736 28 11.191420778576742 18.63625092982891 49.61443094470617 20.557897346888172 29 13.327547731217457 17.845276469129683 47.27126208777585 21.555913711877015 30 17.509298289114803 19.335482271262087 45.1698487478304 17.98537069179271 31 17.29853706917927 24.6131911728242 40.278948673444084 17.809323084552442 32 15.487230349615672 25.83684602033226 38.720555417803126 19.95536821224895 33 17.650632283659807 22.1981155467394 37.658070914951644 22.493181254649144 34 19.216464170592612 22.21795189685098 37.18075874039177 21.38482519216464 35 20.601289362757253 22.971733201091 34.42226630300025 22.0047111331515 36 22.190676915447558 24.7359285891396 33.38829655343417 19.685097941978675 37 18.363501115794694 28.082072898586656 33.8866848499876 19.667741135631044 38 16.35755021076122 33.16885693032482 32.53161418299033 17.941978675923632 39 20.261591867096453 29.464418546987353 32.980411604264816 17.293577981651374 40 22.971733201091 25.87403917679147 34.403669724770644 16.750557897346887 41 22.733696999752045 25.80461195140094 32.06050086784032 19.401190181006694 42 23.316389784279693 25.45375650880238 33.18993305231837 18.039920654599552 43 21.55963302752294 22.873791222415075 37.04934292090255 18.517232829159436 44 18.426729481775354 23.15150012397719 36.839821472848996 21.581948921398464 45 21.148028762707664 21.338953632531616 35.09670220679395 22.416315397966773 46 22.872551450533102 21.872055541780313 38.09695016117035 17.15844284651624 47 17.80436399702455 24.817753533349865 40.74882221671213 16.62906025291346 48 17.177039424745846 24.192908504835113 40.84552442350608 17.784527646912967 49 21.16414579717332 19.124721051326556 42.343168856930326 17.3679642945698 50 20.249194148276718 16.76171584428465 40.012397718819734 22.976692288618892 51 17.93825936027771 16.51500123977188 37.86883213488718 27.67790726506323 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 269.0 1 438.5 2 608.0 3 5444.5 4 10281.0 5 6199.5 6 2118.0 7 1999.0 8 1880.0 9 1804.5 10 1729.0 11 1608.0 12 1487.0 13 1409.5 14 1332.0 15 1203.5 16 1075.0 17 973.5 18 872.0 19 786.5 20 701.0 21 639.5 22 578.0 23 573.5 24 569.0 25 505.0 26 433.5 27 426.0 28 457.5 29 489.0 30 509.0 31 529.0 32 557.5 33 586.0 34 667.0 35 748.0 36 844.5 37 941.0 38 1082.5 39 1224.0 40 1514.5 41 1805.0 42 2309.5 43 2814.0 44 3382.0 45 3950.0 46 5041.0 47 6132.0 48 7637.5 49 9143.0 50 9239.5 51 9336.0 52 7801.5 53 6267.0 54 4769.0 55 3271.0 56 2644.5 57 2018.0 58 1772.5 59 1527.0 60 1474.0 61 1421.0 62 1285.5 63 1150.0 64 1034.5 65 919.0 66 791.5 67 664.0 68 577.0 69 490.0 70 413.0 71 336.0 72 279.5 73 223.0 74 197.5 75 114.0 76 56.0 77 49.0 78 42.0 79 32.0 80 22.0 81 18.0 82 14.0 83 9.0 84 4.0 85 2.5 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 80660.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.36994792958096 #Duplication Level Percentage of deduplicated Percentage of total 1 81.73572251065634 50.16117034465658 2 10.409890709278601 12.777089015621126 3 3.7090159794751623 6.8286635259112325 4 1.6868346094018303 4.140838085792215 5 0.713116906729157 2.1881973716836103 6 0.40605240298175793 1.4951648896603027 7 0.23231853901941377 0.998016364988842 8 0.19797579846871782 0.971981155467394 9 0.15757257429142846 0.8703198611455493 >10 0.7030161006848347 7.462186957599802 >50 0.028282256924102543 1.1418299032977932 >100 0.01818145087978021 2.6072402677907265 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0020201612088644673 8.357302256384825 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6741 8.357302256384825 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCC 373 0.4624349119761964 No Hit CCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC 339 0.42028266798909003 No Hit CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT 311 0.38556905529382596 No Hit GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC 216 0.26779072650632285 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 203 0.25167369204066453 No Hit TCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC 203 0.25167369204066453 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC 195 0.2417555169848748 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 158 0.19588395735184727 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 105 0.13017604760724028 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 91 0.11281924125960824 No Hit GCCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTG 88 0.10909992561368709 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.001239771881973717 0.0 0.0 0.4240019836350112 0.0 2 0.001239771881973717 0.0 0.0 1.5137614678899083 0.0 3 0.001239771881973717 0.0 0.0 2.139846268286635 0.0 4 0.001239771881973717 0.0 0.0 3.0262831638978427 0.0 5 0.001239771881973717 0.0 0.0 4.853706917927101 0.0 6 0.001239771881973717 0.0 0.0 6.245970741383585 0.0 7 0.001239771881973717 0.0 0.0 7.547731217455988 0.0 8 0.001239771881973717 0.0 0.0 9.656583188693281 0.0 9 0.001239771881973717 0.0 0.0 10.539300768658567 0.0 10 0.001239771881973717 0.0 0.0 12.609719811554674 0.0 11 0.001239771881973717 0.0 0.0 17.656831143069674 0.0 12 0.001239771881973717 0.0 0.0 22.61467889908257 0.0 13 0.001239771881973717 0.0 0.0 24.16935283907761 0.0 14 0.001239771881973717 0.0 0.0 24.708653607736178 0.0 15 0.001239771881973717 0.0 0.0 25.529382593602776 0.0 16 0.001239771881973717 0.0 0.0 27.364244978923878 0.0 17 0.001239771881973717 0.0 0.0 29.65906273245723 0.0 18 0.001239771881973717 0.0 0.0 31.713364740887677 0.0 19 0.001239771881973717 0.0 0.0 32.91594346640218 0.0 20 0.001239771881973717 0.0 0.0 34.011901810066945 0.0 21 0.001239771881973717 0.0 0.0 35.23803620133895 0.0 22 0.001239771881973717 0.0 0.0 36.262087775849245 0.0 23 0.001239771881973717 0.0 0.0 36.9761963798661 0.0 24 0.001239771881973717 0.0 0.0 37.359285891395984 0.0 25 0.001239771881973717 0.0 0.0 37.65311182742376 0.0 26 0.001239771881973717 0.0 0.0 37.86511281924126 0.0 27 0.001239771881973717 0.0 0.0 38.02132407636995 0.0 28 0.001239771881973717 0.0 0.0 38.196131911728244 0.0 29 0.001239771881973717 0.0 0.0 38.367220431440614 0.0 30 0.001239771881973717 0.0 0.0 38.55566575750062 0.0 31 0.001239771881973717 0.0 0.0 38.708157698983385 0.0 32 0.001239771881973717 0.0 0.0 38.8395735184726 0.0 33 0.001239771881973717 0.0 0.0 38.96355070666997 0.0 34 0.001239771881973717 0.0 0.0 39.099925613687084 0.0 35 0.001239771881973717 0.0 0.0 39.211505083064715 0.0 36 0.001239771881973717 0.0 0.0 39.336722043144064 0.0 37 0.001239771881973717 0.0 0.0 39.4668980907513 0.0 38 0.001239771881973717 0.0 0.0 39.59211505083065 0.0 39 0.001239771881973717 0.0 0.0 39.76072402677907 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTGGGA 30 2.1404048E-6 45.000004 4 TGGGCGA 70 0.0 45.000004 6 TGTCGGG 30 2.1404048E-6 45.000004 3 TTGTCGG 25 3.8585255E-5 45.0 2 GAGAACC 20 6.994298E-4 45.0 7 TGCATGG 20 6.994298E-4 45.0 2 CATTGGG 20 6.994298E-4 45.0 3 CTGAGAA 20 6.994298E-4 45.0 5 ACATGGG 20 6.994298E-4 45.0 3 CTGGGCG 25 3.8585255E-5 45.0 5 CGGGGAC 20 6.994298E-4 45.0 6 GCGCGAC 25 3.8585255E-5 45.0 9 TCAGACG 20 6.994298E-4 45.0 22 GGGACCC 20 6.994298E-4 45.0 7 TGGGCTC 20 6.994298E-4 45.0 6 TGTGGGC 20 6.994298E-4 45.0 4 TGGGCGC 20 6.994298E-4 45.0 6 GGGGTAC 20 6.994298E-4 45.0 7 GGGAAGA 25 3.8585255E-5 45.0 7 GGGCGCG 25 3.8585255E-5 45.0 7 >>END_MODULE