##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933666.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 166010 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.83476296608638 33.0 31.0 34.0 30.0 34.0 2 32.00425275585808 33.0 31.0 34.0 30.0 34.0 3 32.154087103186555 33.0 31.0 34.0 30.0 34.0 4 35.75916511053551 37.0 35.0 37.0 35.0 37.0 5 35.77509788566954 37.0 35.0 37.0 35.0 37.0 6 35.72595626769472 37.0 35.0 37.0 35.0 37.0 7 35.78377808565749 37.0 35.0 37.0 35.0 37.0 8 35.54831034275043 37.0 35.0 37.0 33.0 37.0 9 37.33416059273538 39.0 37.0 39.0 34.0 39.0 10 36.85283416661647 39.0 37.0 39.0 32.0 39.0 11 36.87972411300524 39.0 37.0 39.0 33.0 39.0 12 37.02635985783989 39.0 37.0 39.0 33.0 39.0 13 36.96843563640744 39.0 37.0 39.0 33.0 39.0 14 37.96664056382146 40.0 37.0 41.0 33.0 41.0 15 37.96149027167038 39.0 37.0 41.0 33.0 41.0 16 38.077164026263475 40.0 37.0 41.0 33.0 41.0 17 38.074134088307936 40.0 37.0 41.0 33.0 41.0 18 37.913372688392265 39.0 37.0 40.0 33.0 41.0 19 37.69416902596229 39.0 37.0 40.0 33.0 41.0 20 37.339280766218906 39.0 35.0 40.0 33.0 41.0 21 37.21475212336606 39.0 35.0 40.0 33.0 41.0 22 37.23558821757725 39.0 35.0 40.0 33.0 41.0 23 37.189464490090955 39.0 35.0 40.0 33.0 41.0 24 37.050406602011925 39.0 35.0 40.0 32.0 41.0 25 36.972519727727246 38.0 35.0 40.0 32.0 41.0 26 36.90562616709837 38.0 35.0 40.0 32.0 41.0 27 36.83464851514969 38.0 35.0 40.0 32.0 41.0 28 36.75759291608939 38.0 35.0 40.0 32.0 41.0 29 36.67644117824227 38.0 35.0 40.0 31.0 41.0 30 36.58189868080236 38.0 35.0 40.0 31.0 41.0 31 36.34519607252575 38.0 35.0 40.0 31.0 41.0 32 35.991175230407805 38.0 35.0 40.0 30.0 41.0 33 35.74418408529607 38.0 35.0 40.0 28.0 41.0 34 35.535521956508646 38.0 35.0 40.0 26.0 41.0 35 35.25421962532378 38.0 35.0 40.0 24.0 41.0 36 35.12548039274743 38.0 35.0 40.0 24.0 41.0 37 35.04629841575809 38.0 35.0 40.0 23.0 41.0 38 34.85764110595747 38.0 34.0 40.0 23.0 41.0 39 34.68665140654178 38.0 34.0 40.0 22.0 41.0 40 34.53408830793326 38.0 34.0 40.0 21.0 41.0 41 34.43088368170592 38.0 34.0 40.0 21.0 41.0 42 34.337449551231856 38.0 33.0 40.0 20.0 41.0 43 34.2657068851274 38.0 33.0 40.0 19.0 41.0 44 34.17631467983856 38.0 33.0 40.0 18.0 41.0 45 34.109294620805976 38.0 33.0 40.0 20.0 41.0 46 33.70191554725619 37.0 33.0 40.0 18.0 41.0 47 33.42969098247094 37.0 33.0 40.0 17.0 41.0 48 33.400680681886634 37.0 33.0 40.0 17.0 41.0 49 33.520197578459126 37.0 33.0 40.0 17.0 41.0 50 33.456767664598516 37.0 33.0 40.0 15.0 41.0 51 32.2207216432745 36.0 30.0 39.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 2.0 12 3.0 13 8.0 14 6.0 15 5.0 16 17.0 17 14.0 18 59.0 19 101.0 20 179.0 21 324.0 22 483.0 23 757.0 24 1241.0 25 2135.0 26 3141.0 27 3683.0 28 3736.0 29 3759.0 30 3897.0 31 4577.0 32 5416.0 33 7064.0 34 10029.0 35 13171.0 36 17475.0 37 23341.0 38 36255.0 39 25125.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.173784711764352 5.7629058490452385 41.36859225347871 27.694717185711703 2 33.4895488223601 5.715920727667008 41.91253538943437 18.88199506053852 3 21.002951629419915 6.070718631407747 51.89145232214927 21.034877417023072 4 16.486356243599783 6.127341726402024 53.196795373772666 24.18950665622553 5 13.717848322390216 7.015842419131378 54.018432624540694 25.247876633937715 6 18.26938136256852 8.049515089452443 58.78079633757003 14.90030721040901 7 65.99000060237336 3.5431600505993615 24.186494789470515 6.280344557556774 8 63.672067947714 4.3629901813143785 23.72628154930426 8.23866032166737 9 57.102584181675795 6.838142280585507 27.0610204204566 8.998253117282092 10 28.79404855129209 20.67887476658033 32.54683452804048 17.980242154087104 11 18.9392205288838 19.09764472019758 37.29715077404976 24.665983976868862 12 18.321185470754774 14.605746641768569 44.24793687127281 22.82513101620384 13 21.167399554243723 16.121317992891996 46.1020420456599 16.609240407204386 14 18.339859044635865 19.350039154267815 43.19498825371966 19.115113547376662 15 12.85946629721101 18.90548762122764 46.097825432202875 22.137220649358472 16 12.029998192879948 17.67785073188362 43.95699054273839 26.33516053249804 17 11.670381302331185 18.222998614541293 41.83603397385699 28.270586109270525 18 13.204023853984701 17.53870248780194 44.754532859466295 24.502740798747062 19 14.01180651767966 20.578278416962835 45.70748750075297 19.70242756460454 20 14.812963074513583 23.46726100837299 42.51189687368231 19.20787904343112 21 13.7148364556352 25.492440214444912 41.80772242635985 18.985000903560024 22 11.122823926269502 23.810011445093668 39.87048972953436 25.19667489910246 23 12.13059454249744 24.36479730136739 36.96162881754111 26.54297933859406 24 13.694355761701102 23.1016203843142 37.0604180471056 26.143605806879105 25 12.976929100656587 25.396662851635444 34.01843262454069 27.60797542316728 26 11.823986506836938 25.905065959881934 37.027287512800434 25.243660020480696 27 13.960002409493406 24.59610866815252 39.047647732064334 22.396241190289743 28 11.572796819468707 21.790855972531777 39.033793144991265 27.60255406300825 29 13.416059273537739 20.782482982952835 36.856213481115596 28.94524426239383 30 19.00427685079212 22.3667248960906 35.1418589241612 23.487139328956086 31 17.813987109210288 27.829046442985362 29.156074935244863 25.200891512559487 32 14.745497259201255 28.4494909945184 28.58743449189808 28.217577254382263 33 18.033853382326363 23.907595927956145 28.774170230708997 29.284380459008492 34 18.780193964219023 20.87585085235829 28.561532437804953 31.782422745617733 35 16.329739172339018 20.895729172941387 29.36088187458587 33.413649780133724 36 15.722546834528039 22.237816998975966 32.73778688030842 29.301849286187583 37 16.117703752785978 23.123305824950304 33.10583699777122 27.653153424492498 38 15.279802421540872 28.36154448527197 28.655502680561412 27.703150412625742 39 19.166315282211915 29.283175712306488 26.337570025902053 25.21293897957954 40 23.953978675983375 23.829287392325764 30.251189687368228 21.965544244322633 41 20.490331907716403 19.541593879886754 33.65700861393892 26.311065598457922 42 17.179085597253177 18.097704957532677 35.15209927112824 29.571110174085895 43 16.047828444069633 19.02234805132221 35.44003373290766 29.489789771700497 44 17.15318354316005 21.514968977772423 31.192096861634845 30.139750617432686 45 22.62032407686284 19.76326727305584 29.086199626528526 28.5302090235528 46 23.908800674658153 20.147581470995725 33.79977109812662 22.143846756219503 47 17.037527859767483 22.703451599301246 37.45798445876755 22.801036082163726 48 15.653876272513703 21.675802662490213 38.16878501295103 24.501536052045058 49 21.091500512017348 17.124871995662915 37.50015059333775 24.28347689898199 50 21.355942413107645 14.78404915366544 34.0202397445937 29.839768688633217 51 18.176615866514066 14.219022950424673 31.814348533220894 35.79001264984037 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 411.0 1 714.5 2 1018.0 3 4365.0 4 7712.0 5 4879.5 6 2047.0 7 2013.0 8 1979.0 9 1947.5 10 1916.0 11 1770.5 12 1625.0 13 1544.0 14 1463.0 15 1318.0 16 1173.0 17 1069.0 18 965.0 19 955.0 20 945.0 21 869.0 22 793.0 23 774.5 24 756.0 25 782.5 26 838.5 27 868.0 28 864.0 29 860.0 30 984.5 31 1109.0 32 1176.5 33 1244.0 34 1461.5 35 1679.0 36 1807.5 37 1936.0 38 2258.0 39 2580.0 40 3496.5 41 4413.0 42 5587.5 43 6762.0 44 8493.0 45 10224.0 46 13433.5 47 16643.0 48 20649.5 49 24656.0 50 24854.5 51 25053.0 52 20919.5 53 16786.0 54 12513.0 55 8240.0 56 6434.0 57 4628.0 58 4083.5 59 3539.0 60 3306.0 61 3073.0 62 2787.5 63 2502.0 64 2186.5 65 1871.0 66 1531.5 67 1192.0 68 1012.5 69 833.0 70 713.5 71 594.0 72 532.5 73 471.0 74 367.0 75 221.5 76 180.0 77 142.5 78 105.0 79 79.5 80 54.0 81 35.5 82 17.0 83 17.0 84 17.0 85 10.0 86 3.0 87 3.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 166010.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.28456117101379 #Duplication Level Percentage of deduplicated Percentage of total 1 77.20199490571288 43.452804047948916 2 12.188831096556004 13.720860189145231 3 4.649072111988698 7.850129510270467 4 2.167212483143903 4.879224143123908 5 1.105545923500075 3.1112583579302453 6 0.6153813223741946 2.078188060960183 7 0.40133564502664865 1.5812300463827482 8 0.26755709668443245 1.2047467020059033 9 0.22367773282818554 1.1330642732365521 >10 1.0787902138316317 10.856574905126196 >50 0.06635415997773925 2.601650502981748 >100 0.027825938055180972 2.529968074212397 >500 0.005351141933688649 2.153484729835552 >1k 0.0010702283867377298 2.8468164568399494 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4726 2.8468164568399494 No Hit CTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGCT 847 0.5102102282995 Illumina PCR Primer Index 4 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCC 813 0.4897295343653997 No Hit CCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 805 0.48491054755737606 TruSeq Adapter, Index 13 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 566 0.34094331666767064 TruSeq Adapter, Index 13 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 544 0.3276911029456057 TruSeq Adapter, Index 13 (96% over 25bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC 399 0.2403469670501777 No Hit GGGACTGTCTAGGGCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGT 245 0.14758147099572314 No Hit TCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 244 0.1469790976447202 Illumina PCR Primer Index 4 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 224 0.13493163062466115 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 221 0.1331245105716523 No Hit GCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 201 0.12107704355159327 TruSeq Adapter, Index 13 (95% over 24bp) GGCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCT 191 0.11505331004156376 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 168 0.10119872296849587 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5879163905788808 0.0 2 0.0 0.0 0.0 1.9607252575146075 0.0 3 0.0 0.0 0.0 2.8160954159387988 0.0 4 0.0 0.0 0.0 4.098548280224083 0.0 5 0.0 0.0 0.0 6.735738810915005 0.0 6 0.0 0.0 0.0 9.039214505150293 0.0 7 0.0 0.0 0.0 11.121016806216494 0.0 8 0.0 0.0 0.0 14.122643214264201 0.0 9 0.0 0.0 0.0 15.558701283055237 0.0 10 0.0 0.0 0.0 18.798867538100115 0.0 11 0.0 0.0 0.0 26.285163544364796 0.0 12 0.0 0.0 0.0 33.2449852418529 0.0 13 0.0 0.0 0.0 35.570748750075296 0.0 14 0.0 0.0 0.0 36.347810372869105 0.0 15 0.0 0.0 0.0 37.46762243238359 0.0 16 0.0 0.0 0.0 40.133726883922655 0.0 17 0.0 0.0 0.0 43.341967351364374 0.0 18 0.0 0.0 0.0 46.24058791639058 0.0 19 0.0 0.0 0.0 47.929642792602856 0.0 20 0.0 0.0 0.0 49.358472381181855 0.0 21 0.0 0.0 0.0 51.05716523101018 0.0 22 0.0 0.0 0.0 52.47695921932414 0.0 23 0.0 0.0 0.0 53.53653394373833 0.0 24 0.0 0.0 0.0 54.14011204144329 0.0 25 0.0 0.0 0.0 54.50635503885308 0.0 26 0.0 0.0 0.0 54.76537557978435 0.0 27 0.0 0.0 0.0 54.9996988133245 0.0 28 0.0 0.0 0.0 55.205108126016505 0.0 29 0.0 0.0 0.0 55.432202879344615 0.0 30 0.0 0.0 0.0 55.66230949942774 0.0 31 0.0 0.0 0.0 55.85265947834468 0.0 32 0.0 0.0 0.0 56.03397385699657 0.0 33 0.0 0.0 0.0 56.2038431419794 0.0 34 0.0 0.0 0.0 56.36106258659117 0.0 35 0.0 0.0 0.0 56.52671525811698 0.0 36 0.0 0.0 0.0 56.70682489006686 0.0 37 0.0 0.0 0.0 56.87428468164568 0.0 38 0.0 0.0 0.0 57.01463767242937 0.0 39 6.023733510029517E-4 0.0 0.0 57.197156797783265 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGGG 30 2.1542546E-6 45.000004 3 ACTGCGG 25 3.8763494E-5 45.000004 2 CAGCATA 30 2.1542546E-6 45.000004 38 TTCGTTG 25 3.8763494E-5 45.000004 1 ATAGAGA 30 2.1542546E-6 45.000004 42 CGGGGTA 25 3.8763494E-5 45.000004 6 CGGGCTC 25 3.8763494E-5 45.000004 6 CTTTGCG 25 3.8763494E-5 45.000004 1 GCGATTC 25 3.8763494E-5 45.000004 9 CAGTGCC 30 2.1542546E-6 45.000004 19 GCTGTTG 25 3.8763494E-5 45.000004 1 ACTCAGT 30 2.1542546E-6 45.000004 16 AGGGCAC 30 2.1542546E-6 45.000004 11 TTGGGAC 205 0.0 45.000004 5 TATGGGA 55 1.8189894E-12 45.0 4 AGGGTGG 20 7.0158386E-4 45.0 6 CTACGAA 20 7.0158386E-4 45.0 11 TACGAAT 20 7.0158386E-4 45.0 12 TTGGTTG 40 6.7539077E-9 45.0 1 AGTTATA 20 7.0158386E-4 45.0 20 >>END_MODULE