##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933665.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 167953 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.752817752585546 33.0 31.0 34.0 30.0 34.0 2 31.93451739474734 33.0 31.0 34.0 30.0 34.0 3 32.099771960012625 33.0 31.0 34.0 30.0 34.0 4 35.662441278214736 37.0 35.0 37.0 33.0 37.0 5 35.75075169839181 37.0 35.0 37.0 35.0 37.0 6 35.73530094728883 37.0 35.0 37.0 35.0 37.0 7 35.70691800682334 37.0 35.0 37.0 35.0 37.0 8 35.520240781647246 37.0 35.0 37.0 33.0 37.0 9 37.32009550290855 39.0 37.0 39.0 34.0 39.0 10 36.88020458104351 39.0 37.0 39.0 32.0 39.0 11 36.89880502283377 39.0 37.0 39.0 33.0 39.0 12 36.98633546289736 39.0 37.0 39.0 33.0 39.0 13 36.968645990247275 39.0 37.0 39.0 33.0 39.0 14 38.001131268866885 40.0 37.0 41.0 33.0 41.0 15 37.98977690187136 40.0 37.0 41.0 33.0 41.0 16 38.15110179633588 40.0 37.0 41.0 33.0 41.0 17 38.207665239680146 40.0 37.0 41.0 33.0 41.0 18 38.09147797300435 39.0 37.0 41.0 34.0 41.0 19 37.9425732198889 39.0 37.0 41.0 34.0 41.0 20 37.52591498812168 39.0 35.0 40.0 33.0 41.0 21 37.44161759539871 39.0 35.0 40.0 33.0 41.0 22 37.43971825451168 39.0 35.0 40.0 33.0 41.0 23 37.343078123046325 39.0 35.0 40.0 33.0 41.0 24 37.22359826856323 39.0 35.0 40.0 33.0 41.0 25 37.1575917072038 39.0 35.0 40.0 33.0 41.0 26 37.14852369412871 39.0 35.0 40.0 33.0 41.0 27 37.09644364792531 39.0 35.0 40.0 33.0 41.0 28 37.078914934535256 39.0 35.0 40.0 33.0 41.0 29 36.92433597494537 39.0 35.0 40.0 32.0 41.0 30 36.73700975868249 39.0 35.0 40.0 31.0 41.0 31 36.48265883907998 38.0 35.0 40.0 31.0 41.0 32 36.24953409584824 39.0 35.0 40.0 30.0 41.0 33 35.89968622174061 39.0 35.0 40.0 29.0 41.0 34 35.67542109995058 39.0 35.0 40.0 27.0 41.0 35 35.4589557792954 39.0 35.0 40.0 25.0 41.0 36 35.31727328478801 38.0 35.0 40.0 24.0 41.0 37 35.2774228504403 38.0 35.0 40.0 24.0 41.0 38 35.0548189076706 38.0 35.0 40.0 23.0 41.0 39 34.976719677528834 38.0 35.0 40.0 23.0 41.0 40 34.81010163557662 38.0 34.0 40.0 23.0 41.0 41 34.704768595976255 38.0 34.0 40.0 22.0 41.0 42 34.54196709793811 38.0 34.0 40.0 21.0 41.0 43 34.52836210130215 38.0 34.0 40.0 21.0 41.0 44 34.45713384101504 38.0 34.0 40.0 20.0 41.0 45 34.405559888778406 38.0 34.0 40.0 20.0 41.0 46 34.02570361946497 38.0 33.0 40.0 19.0 41.0 47 33.89240442266586 37.0 33.0 40.0 19.0 41.0 48 33.81962215619846 37.0 33.0 40.0 18.0 41.0 49 33.91512506475026 37.0 33.0 40.0 18.0 41.0 50 33.75067429578513 37.0 33.0 40.0 18.0 41.0 51 32.711591933457576 36.0 31.0 39.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 4.0 11 6.0 12 4.0 13 3.0 14 7.0 15 13.0 16 21.0 17 35.0 18 52.0 19 88.0 20 170.0 21 265.0 22 461.0 23 723.0 24 1215.0 25 2066.0 26 3139.0 27 3629.0 28 3722.0 29 3571.0 30 3743.0 31 4376.0 32 5276.0 33 6600.0 34 9787.0 35 12730.0 36 16460.0 37 22023.0 38 36876.0 39 30882.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.392222824242495 5.768280411781868 41.377647317999674 27.461849445975954 2 33.394461545789596 5.668252427762529 41.939709323441676 18.997576703006196 3 21.346448113460315 6.115401332515645 51.77043577667562 20.767714777348427 4 16.705268735896354 6.271992759879252 52.71712919685865 24.30560930736575 5 13.655606032640083 6.949563270676916 54.02940108244568 25.365429614237318 6 18.590915315594245 8.295773222270517 58.38895405262187 14.724357409513376 7 66.27092103147905 3.5343221020166355 23.929313557959667 6.265443308544652 8 63.87024941501491 4.288104410162367 23.629825010568435 8.211821164254285 9 57.46726762844367 6.734026781301912 26.848582639190727 8.95012295106369 10 29.1039755169601 20.497401058629496 32.59066524563419 17.807958178776207 11 19.11606223169577 19.149404893035552 36.990110328484754 24.744422546783923 12 18.431346864896728 14.64219156549749 44.26238292855739 22.664078641048388 13 21.488154424154377 16.228349597804147 45.73362786017517 16.549868117866307 14 18.503986234244106 19.469732603764147 42.98940775097795 19.036873411013797 15 12.904205343161479 18.91838788232422 46.0432382869017 22.13416848761261 16 12.208772692360363 17.647198918745126 43.86227099248004 26.281757396414474 17 11.755074336272648 18.21819199418885 41.73667633206909 28.29005733746941 18 13.275737855233311 17.644817300077996 44.591641709287714 24.487803135400977 19 14.077747941388363 20.726036450673703 45.47998547212613 19.716230135811806 20 14.899406381547218 23.62148934523349 42.17846659482117 19.30063767839812 21 14.000345334706735 25.382100944907204 41.791453561413014 18.82610015897305 22 11.342458902192876 23.660786053241083 39.76707769435497 25.229677350211073 23 12.133156299679076 24.387775151381636 36.944264169142556 26.53480437979673 24 13.850898763344507 23.03977898578769 37.11216828517502 25.99715396569278 25 13.056628937857614 25.324346692229373 33.98807999857103 27.630944371341982 26 11.922383047638327 25.698260822968333 37.045482962495456 25.33387316689788 27 14.14621947806827 24.45981911606223 39.08772096955696 22.306240436312542 28 11.583002387572714 21.74953707287158 38.80430834816883 27.863152191386874 29 13.519853768613837 20.988014504057684 36.7436127964371 28.748518930891382 30 19.23871559305282 22.12642822694444 35.20389632813942 23.43095985186332 31 17.98003012747614 27.6107006126714 29.170660839639662 25.2386084202128 32 14.908337451548945 28.39068072615553 28.64491851887135 28.05606330342417 33 18.200329854185394 23.841193667275963 28.787220234232198 29.17125624430644 34 18.93803623632802 20.84333117002971 28.622888546200425 31.595744047441844 35 16.38375021583419 20.90406244604145 29.41418134835341 33.29800598977094 36 15.833596303727829 22.30028638964472 32.66151840098123 29.204598905646222 37 16.35278917316154 23.038588176454127 32.97708287437557 27.63153977600876 38 15.471590266324508 28.207891493453523 28.45617523950153 27.86434300072044 39 19.21906723904902 29.342732788339593 26.32164950908885 25.116550463522536 40 23.918596273957597 23.787607247265605 30.448399254553358 21.845397224223444 41 20.524194268634677 19.70134501914226 33.71717087518532 26.057289837037743 42 17.38522086536114 18.165796383512053 35.040755449441214 29.408227301685592 43 16.105696236447102 19.295279036397087 35.350365876167736 29.248658850988075 44 17.10954850464118 21.62390668818062 31.26648526671152 30.00005954046668 45 22.901049698427535 19.61798836579281 29.01287860294249 28.468083332837164 46 24.072210677987293 20.135990425892956 33.895792275219854 21.896006620899893 47 17.153608449983032 22.852226515751433 37.34735312855382 22.646811905711715 48 15.75738450637976 21.802528088215155 38.00229826201378 24.437789143391306 49 21.16782671342578 17.047626419295874 37.4557167779081 24.32883008937024 50 21.391103463468948 14.832125654200878 33.9987972825731 29.777973599757075 51 18.1610331461778 14.502271468803773 31.703512292129343 35.633183092889084 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 365.0 1 733.0 2 1101.0 3 4404.0 4 7707.0 5 4936.0 6 2165.0 7 2070.0 8 1975.0 9 1963.0 10 1951.0 11 1771.5 12 1592.0 13 1494.5 14 1397.0 15 1271.5 16 1146.0 17 1069.5 18 993.0 19 951.5 20 910.0 21 877.0 22 844.0 23 787.0 24 730.0 25 782.0 26 839.0 27 844.0 28 873.0 29 902.0 30 972.0 31 1042.0 32 1172.5 33 1303.0 34 1501.0 35 1699.0 36 1862.0 37 2025.0 38 2321.5 39 2618.0 40 3531.0 41 4444.0 42 5690.5 43 6937.0 44 8484.5 45 10032.0 46 13274.0 47 16516.0 48 20821.5 49 25127.0 50 25287.5 51 25448.0 52 21311.0 53 17174.0 54 12721.0 55 8268.0 56 6534.5 57 4801.0 58 4206.0 59 3611.0 60 3382.5 61 3154.0 62 2817.5 63 2481.0 64 2215.0 65 1949.0 66 1573.5 67 1198.0 68 1037.0 69 876.0 70 753.0 71 630.0 72 541.5 73 453.0 74 381.0 75 245.0 76 181.0 77 148.0 78 115.0 79 85.5 80 56.0 81 43.0 82 30.0 83 20.0 84 10.0 85 8.0 86 6.0 87 3.5 88 1.0 89 1.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 167953.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.19310164153066 #Duplication Level Percentage of deduplicated Percentage of total 1 77.25741168492657 43.41333587372658 2 12.01869079658395 13.50735027061142 3 4.723558456419928 7.962942013539502 4 2.130793193328954 4.789435139592624 5 1.1496323295683315 3.230070317291147 6 0.6336222424717625 2.1363119444130203 7 0.4238275869376338 1.667133066988979 8 0.2935006039543114 1.3194167415884206 9 0.18648413825255886 0.9431209921823367 >10 1.0733433639195575 10.6881091733997 >50 0.07416982771408591 2.853774567885063 >100 0.02860836211829028 2.6019183938363706 >500 0.0052978448367204225 2.139884372413711 >1k 0.0010595689673440843 2.7471971325311246 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4614 2.7471971325311246 No Hit CTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGCT 814 0.48465939876036745 Illumina PCR Primer Index 4 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 798 0.47513292409185903 TruSeq Adapter, Index 13 (96% over 25bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCC 795 0.47334671009151374 No Hit TCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 603 0.3590290140694123 TruSeq Adapter, Index 13 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 584 0.34771632540055847 TruSeq Adapter, Index 13 (96% over 25bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC 412 0.24530672271409265 No Hit TCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 266 0.158377641363953 Illumina PCR Primer Index 4 (95% over 21bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 243 0.14468333402797212 No Hit GGGACTGTCTAGGGCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGT 232 0.13813388269337254 No Hit GGCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCT 203 0.12086714735670097 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 189 0.11253148202175609 No Hit GCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 183 0.10895905402106541 TruSeq Adapter, Index 13 (95% over 24bp) CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 181 0.10776824468750187 No Hit CGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 180 0.10717284002072008 Illumina PCR Primer Index 4 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0011908093335635565 0.0 0.0 0.5453906747721089 0.0 2 0.0011908093335635565 0.0 0.0 1.901127101034218 0.0 3 0.0011908093335635565 0.0 0.0 2.7126636618577815 0.0 4 0.0011908093335635565 0.0 0.0 3.9826618161033145 0.0 5 0.0011908093335635565 0.0 0.0 6.682821979958679 0.0 6 0.0011908093335635565 0.0 0.0 8.945955118396219 0.0 7 0.0011908093335635565 0.0 0.0 10.97211719945461 0.0 8 0.0011908093335635565 0.0 0.0 13.927110560692574 0.0 9 0.0011908093335635565 0.0 0.0 15.326906932296536 0.0 10 0.0011908093335635565 0.0 0.0 18.49207814090847 0.0 11 0.0011908093335635565 0.0 0.0 25.86854655766792 0.0 12 0.0011908093335635565 0.0 0.0 32.727608318994 0.0 13 0.0011908093335635565 0.0 0.0 34.98716902943085 0.0 14 0.0011908093335635565 0.0 0.0 35.7665537382482 0.0 15 0.0011908093335635565 0.0 0.0 36.89127315379898 0.0 16 0.0011908093335635565 0.0 0.0 39.59917357832251 0.0 17 0.0011908093335635565 0.0 0.0 42.7429102189303 0.0 18 0.0011908093335635565 0.0 0.0 45.59668478681536 0.0 19 0.0011908093335635565 0.0 0.0 47.26798568647181 0.0 20 0.0011908093335635565 0.0 0.0 48.68683500741279 0.0 21 0.0011908093335635565 0.0 0.0 50.33551052973153 0.0 22 0.0011908093335635565 0.0 0.0 51.71268152399779 0.0 23 0.0011908093335635565 0.0 0.0 52.76476157020119 0.0 24 0.0011908093335635565 0.0 0.0 53.39231808898918 0.0 25 0.0011908093335635565 0.0 0.0 53.759087363726756 0.0 26 0.0011908093335635565 0.0 0.0 54.04071377111454 0.0 27 0.0011908093335635565 0.0 0.0 54.28780670782898 0.0 28 0.0011908093335635565 0.0 0.0 54.501556983203635 0.0 29 0.0011908093335635565 0.0 0.0 54.69089566724024 0.0 30 0.0011908093335635565 0.0 0.0 54.92488970128548 0.0 31 0.0011908093335635565 0.0 0.0 55.11006055265461 0.0 32 0.0011908093335635565 0.0 0.0 55.31130733002685 0.0 33 0.0011908093335635565 0.0 0.0 55.47087578072437 0.0 34 0.0011908093335635565 0.0 0.0 55.635802873422925 0.0 35 0.0011908093335635565 0.0 0.0 55.80847022678964 0.0 36 0.0011908093335635565 0.0 0.0 55.967443272820375 0.0 37 0.0011908093335635565 0.0 0.0 56.12046227218329 0.0 38 0.0011908093335635565 0.0 0.0 56.292534220883226 0.0 39 0.0011908093335635565 0.0 0.0 56.47651426291879 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAGTGTT 20 7.0160744E-4 45.000004 9 TACCATT 20 7.0160744E-4 45.000004 4 GATAACG 20 7.0160744E-4 45.000004 17 TTGCTAG 20 7.0160744E-4 45.000004 1 TTTCGCG 20 7.0160744E-4 45.000004 1 TCGGGAC 20 7.0160744E-4 45.000004 5 TAACGAA 20 7.0160744E-4 45.000004 19 GAAAGGT 20 7.0160744E-4 45.000004 9 CTAGTTA 20 7.0160744E-4 45.000004 45 AACGAGA 20 7.0160744E-4 45.000004 24 CTACCAT 20 7.0160744E-4 45.000004 3 GTTTTCG 20 7.0160744E-4 45.000004 1 TGCTAAC 20 7.0160744E-4 45.000004 39 ATAACGA 20 7.0160744E-4 45.000004 18 GCTACCA 20 7.0160744E-4 45.000004 2 AGCTACC 20 7.0160744E-4 45.000004 1 CGATAAC 20 7.0160744E-4 45.000004 16 GCGTAGG 20 7.0160744E-4 45.000004 2 TAACTAG 20 7.0160744E-4 45.000004 42 TTGATCC 25 3.876546E-5 45.0 17 >>END_MODULE