SRR2933664.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933664.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	312075
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7172	2.298165505086918	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCC	1319	0.4226548105423376	No Hit
CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT	651	0.20860370103340542	TruSeq Adapter, Index 14 (95% over 22bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGC	635	0.20347672835055675	No Hit
CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	544	0.1743170712168549	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	445	0.14259392774172874	TruSeq Adapter, Index 15 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	429	0.13746695505888007	TruSeq Adapter, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	25	3.884254E-5	45.0	21
GTGCATA	20	7.0253795E-4	45.0	11
CGGGTTA	20	7.0253795E-4	45.0	6
CGGGTAC	25	3.884254E-5	45.0	6
TCTTGCG	45	3.8198777E-10	45.0	1
CACGGGA	35	1.2081182E-7	45.0	4
GGATGAT	35	1.2081182E-7	45.0	8
GACACGG	25	3.884254E-5	45.0	16
TTTCGCG	40	6.7884685E-9	45.0	1
TACGGGT	20	7.0253795E-4	45.0	4
TGTTCCG	20	7.0253795E-4	45.0	1
AATAGGC	20	7.0253795E-4	45.0	44
ATCGGGG	20	7.0253795E-4	45.0	4
CCGCACT	20	7.0253795E-4	45.0	34
CGTTTTT	4540	0.0	44.306168	1
CGTTTGG	120	0.0	41.249996	2
TTGGGCG	425	0.0	39.705883	5
GTTTGCG	40	3.4474397E-7	39.375	1
ATTTGCG	40	3.4474397E-7	39.375	1
CTTGGGC	435	0.0	39.310345	4