SRR2933663.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933663.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	314233
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7064	2.2480134167958172	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCC	1354	0.4308904538988585	No Hit
CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT	670	0.2132175805851072	TruSeq Adapter, Index 14 (95% over 22bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGC	642	0.2043069951278192	No Hit
CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	553	0.17598406278143924	TruSeq Adapter, Index 15 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	486	0.15466230472292855	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	440	0.14002348575738385	TruSeq Adapter, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAG	25	3.884315E-5	45.0	6
GGCCGAT	80	0.0	45.0	8
TTCACGG	20	7.025454E-4	45.0	2
ATCCGGG	25	3.884315E-5	45.0	3
GCCGATG	20	7.025454E-4	45.0	9
GTACGGC	20	7.025454E-4	45.0	9
CGTTTTT	4550	0.0	44.010986	1
CTTTGCG	75	0.0	42.000004	1
TCGGGTA	50	1.0768417E-9	40.5	5
TCGGGAA	85	0.0	39.705883	5
CTTGTTG	165	0.0	39.545452	1
TTGGGTC	330	0.0	39.545452	5
CGTCGGG	40	3.4475306E-7	39.375	3
TTCTGCG	75	0.0	39.000004	1
TTCTCGG	110	0.0	38.863632	2
TGGGCAA	245	0.0	38.57143	6
CGGGTGT	70	0.0	38.571426	6
TTGTCCG	35	6.2338077E-6	38.571426	1
TTTCCGG	140	0.0	38.571426	2
CTTGGGC	550	0.0	38.454544	4