SRR2933662.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933662.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1345665
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38782	2.881995147380663	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	12575	0.9344822076817038	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	6130	0.45553685352595186	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC	5702	0.42373101774958843	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	3312	0.2461236637647557	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC	2300	0.17091921094774704	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	2102	0.15620529626615837	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	1916	0.14238313398951447	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	1896	0.1408968799812732	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	1421	0.10559834728554283	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTGTTCTT	1378	0.10240290116782409	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGCCG	45	3.8562575E-10	45.0	6
CGTTTTT	30255	0.0	44.22657	1
CCGATGA	380	0.0	40.263153	18
TTATGCG	45	1.9286745E-8	40.0	1
GTTTTTT	34180	0.0	39.80617	2
CGTTTGG	770	0.0	39.15584	2
GCTTGCG	150	0.0	39.0	1
GCGAGAC	250	0.0	38.7	21
AGACACG	250	0.0	38.7	24
TCTCGCG	70	0.0	38.571426	1
GCGATAG	35	6.2490853E-6	38.571426	9
CGATGAA	410	0.0	38.414635	19
TCAAGCG	250	0.0	37.800003	17
GCTACGA	155	0.0	37.741936	10
CGGGTCA	90	0.0	37.5	6
CTTTGCG	420	0.0	37.5	1
AGCTACG	150	0.0	37.5	9
GACGCAT	30	1.14002585E-4	37.499996	9
GCCGTCA	30	1.14002585E-4	37.499996	29
GACACGA	260	0.0	37.211536	25