SRR2933661.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933661.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1365568
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39309	2.87858239208886	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	13022	0.9535958663354737	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	5940	0.43498383090406334	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC	5881	0.4306632844354876	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	3455	0.2530082720157473	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC	2208	0.1616909593663589	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	2175	0.159274382528003	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	1944	0.14235834465951167	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	1898	0.13898978300604584	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTGTTCTT	1386	0.10149622721094811	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	40	6.8175723E-9	45.0	16
CGTTTTT	30200	0.0	44.29222	1
GCTACGA	225	0.0	42.000004	10
CTACGAA	230	0.0	41.08696	11
AGCTACG	230	0.0	41.08696	9
TACGAAT	225	0.0	40.000004	12
GTTTTTT	34285	0.0	39.776142	2
TCAAGCG	215	0.0	39.76744	17
CGTTCAT	40	3.458863E-7	39.375	17
CCGATGA	430	0.0	39.244186	18
CTTTGCG	425	0.0	38.647057	1
TTATCCG	35	6.249151E-6	38.57143	1
CGATGAA	450	0.0	38.500004	19
ACACGAC	230	0.0	38.152176	26
TAGGGCG	155	0.0	37.741936	5
GCTTGCG	180	0.0	37.5	1
CCGCCGT	30	1.14003466E-4	37.499996	40
GACACGA	235	0.0	37.340427	25
CGAATAT	230	0.0	37.173916	14
CGCGACC	85	0.0	37.058823	10