SRR2933660.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933660.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	98452
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3013	3.0603745987892577	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCC	272	0.2762767643115427	No Hit
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	269	0.2732295941169301	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	254	0.257993743143867	Illumina Single End Adapter 2 (95% over 21bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	198	0.20111323284443178	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	191	0.1940031690570024	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	166	0.16861008410189737	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	143	0.14524844594320074	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	117	0.11883963758989152	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	116	0.11782391419168732	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	112	0.11376102059887051	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	107	0.10868240360784952	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	102	0.1036037866168285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTAG	20	7.001866E-4	45.000004	14
AATCCTA	20	7.001866E-4	45.000004	13
GCTGGGT	20	7.001866E-4	45.000004	4
GACGTGG	20	7.001866E-4	45.000004	25
TATGGGA	30	2.145267E-6	45.000004	4
ATCAGAC	20	7.001866E-4	45.000004	21
CGACCTC	20	7.001866E-4	45.000004	12
TTCCGAT	20	7.001866E-4	45.000004	13
CTTGCGG	20	7.001866E-4	45.000004	2
TCAGACG	20	7.001866E-4	45.000004	22
TAGGGCC	20	7.001866E-4	45.000004	5
TCGAGCT	30	2.145267E-6	45.000004	16
TCGCATT	25	3.8647864E-5	45.0	22
CTCCGGG	25	3.8647864E-5	45.0	3
GCGCGAC	25	3.8647864E-5	45.0	9
CGCATTT	25	3.8647864E-5	45.0	23
AAATTCT	25	3.8647864E-5	45.0	33
CGGGAGT	25	3.8647864E-5	45.0	6
CGGGAGC	25	3.8647864E-5	45.0	6
AATTCTA	25	3.8647864E-5	45.0	34