##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933660.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 98452 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02938487791005 33.0 31.0 34.0 30.0 34.0 2 32.184770243367325 34.0 31.0 34.0 30.0 34.0 3 32.32303051233088 34.0 31.0 34.0 30.0 34.0 4 35.89142932596595 37.0 35.0 37.0 35.0 37.0 5 35.88491853898346 37.0 35.0 37.0 35.0 37.0 6 35.81948563767115 37.0 35.0 37.0 35.0 37.0 7 35.892729451915656 37.0 35.0 37.0 35.0 37.0 8 35.6908341120546 37.0 35.0 37.0 35.0 37.0 9 37.50736399463698 39.0 37.0 39.0 35.0 39.0 10 36.986328363060174 39.0 37.0 39.0 33.0 39.0 11 36.96220493235282 39.0 37.0 39.0 33.0 39.0 12 37.07661601592654 39.0 37.0 39.0 33.0 39.0 13 37.059521391134766 39.0 37.0 39.0 33.0 39.0 14 38.18789867143379 40.0 37.0 41.0 33.0 41.0 15 38.197883232438144 40.0 37.0 41.0 33.0 41.0 16 38.25598261081542 40.0 38.0 41.0 33.0 41.0 17 38.22155974485028 40.0 37.0 41.0 33.0 41.0 18 38.03649494169748 39.0 37.0 41.0 33.0 41.0 19 37.80516393775647 39.0 37.0 41.0 34.0 41.0 20 37.468299272742044 39.0 35.0 41.0 33.0 41.0 21 37.30023767927518 39.0 35.0 40.0 33.0 41.0 22 37.310303498151384 39.0 35.0 40.0 33.0 41.0 23 37.23015276479909 39.0 35.0 40.0 33.0 41.0 24 37.12609190265307 39.0 35.0 40.0 33.0 41.0 25 37.04186811847398 39.0 35.0 40.0 32.0 41.0 26 36.96865477593142 39.0 35.0 40.0 32.0 41.0 27 36.90815829033438 39.0 35.0 40.0 32.0 41.0 28 36.79752569780197 38.0 35.0 40.0 32.0 41.0 29 36.71137203916629 38.0 35.0 40.0 32.0 41.0 30 36.6452484459432 38.0 35.0 40.0 31.0 41.0 31 36.41455734774306 38.0 35.0 40.0 31.0 41.0 32 36.109718441474016 38.0 35.0 40.0 30.0 41.0 33 35.82009507171007 38.0 35.0 40.0 29.0 41.0 34 35.53725673424613 39.0 35.0 40.0 25.0 41.0 35 35.30301060415228 39.0 35.0 40.0 24.0 41.0 36 35.19421647097062 38.0 35.0 40.0 23.0 41.0 37 35.01696258075001 38.0 35.0 40.0 23.0 41.0 38 34.933358387843825 38.0 35.0 40.0 23.0 41.0 39 34.800125949701375 38.0 35.0 40.0 22.0 41.0 40 34.6465485718929 38.0 34.0 40.0 21.0 41.0 41 34.49964449681063 38.0 34.0 40.0 20.0 41.0 42 34.35733149148824 38.0 34.0 40.0 19.0 41.0 43 34.23735424369236 38.0 34.0 40.0 18.0 41.0 44 34.179661154674356 38.0 34.0 40.0 18.0 41.0 45 34.18824401738919 38.0 34.0 40.0 19.0 41.0 46 33.965658391906715 38.0 33.0 40.0 18.0 41.0 47 33.77536261325316 37.0 33.0 40.0 18.0 41.0 48 33.70457684963231 37.0 33.0 40.0 18.0 41.0 49 33.74367204322919 37.0 33.0 40.0 18.0 41.0 50 33.69234753991793 37.0 33.0 40.0 18.0 41.0 51 32.63991589810263 36.0 31.0 39.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 0.0 12 1.0 13 3.0 14 2.0 15 9.0 16 6.0 17 22.0 18 35.0 19 63.0 20 118.0 21 196.0 22 321.0 23 455.0 24 775.0 25 1244.0 26 1901.0 27 2202.0 28 2284.0 29 2203.0 30 2243.0 31 2454.0 32 2964.0 33 3771.0 34 5493.0 35 7565.0 36 9828.0 37 12740.0 38 21049.0 39 18498.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.4347296144314 5.670783732174054 40.48673465241946 28.407752000975094 2 32.27257953114208 6.147158005931825 43.5440620810141 18.036200381912 3 19.440945841628405 6.026286921545525 54.863283630601714 19.669483606224354 4 15.971234713362856 5.4818591801080725 55.28988745784748 23.25701864868159 5 13.756957705277697 7.1435826595701455 55.62609190265307 23.47336773249909 6 18.17433876406777 8.734205501157925 59.297931987161256 13.793523747613051 7 69.09661560963718 3.381343192621785 22.769471417543574 4.752569780197457 8 68.46077276236136 4.304635761589404 21.366757404623574 5.867834071425669 9 62.861089668061595 6.2893592816804125 24.073660260837766 6.775890789420225 10 30.034940884898226 24.117336366960547 29.75155405679925 16.096168691341976 11 19.59127290456263 19.73245845691301 38.01040100759761 22.665867630926744 12 17.78937959614838 16.478080689066754 43.70353065453216 22.02900906025271 13 20.668955430057288 17.447080810953562 45.63340511112014 16.250558647869013 14 18.418112379636778 19.50595213911348 43.514606102466175 18.56132937878357 15 14.733067890951936 19.62987039369439 45.223052858245644 20.414008857108033 16 14.645715678706376 18.724860845894444 43.11847397716654 23.51094949823264 17 14.721894933571688 19.50595213911348 41.14187624426116 24.63027668305367 18 15.70105228944054 18.59789542111892 42.67866574574412 23.02238654369642 19 16.391744200219396 21.244870596839068 43.17738593426238 19.18599926867915 20 17.345508471133144 23.46727339210986 41.1997724779588 17.987445658798194 21 16.702555560069882 25.030471701946126 40.18811197334742 18.078860764636573 22 14.380611871775079 22.704465120058508 39.87628489009873 23.038638118067688 23 14.30138544671515 24.349937025149313 37.0403851623126 24.30829236582294 24 15.347580546865478 23.318977775972048 37.65794498842075 23.67549668874172 25 15.63807743875188 24.70036159752976 35.36545727867387 24.29610368504449 26 14.344045829439727 25.400195018892457 37.16430341689351 23.091455734774303 27 15.517206354365578 24.00154389956527 39.207938894080364 21.273310851988786 28 13.8057124283915 22.360134888067282 39.44257099906554 24.391581684475682 29 15.524316418153008 21.160565554788118 37.66708649900459 25.648031528054283 30 19.228659651403728 21.97314427335148 36.423841059602644 22.37435501564214 31 18.327712997196606 27.148254987201888 31.432576280827206 23.091455734774303 32 16.37142973225531 27.914110429447852 30.049161012473085 25.66529882582375 33 18.355137528948116 24.170153983667166 29.892739609149636 27.58196887823508 34 18.07784504123837 23.33624507374152 29.53520497298176 29.050704912038356 35 17.48974119367814 23.841059602649008 28.726689148011214 29.942510055661643 36 17.4805996830943 24.6607483849998 30.931824645512535 26.92682728639337 37 16.789907772315445 27.549465729492546 31.5046926420997 24.15593385609231 38 17.725389022061513 28.880063381140047 27.43976760248649 25.95477999431195 39 18.244423678543857 28.237110470076786 26.94409458416284 26.574371267216513 40 19.595335798155446 26.366147970584652 28.58245642546622 25.456059805793686 41 20.73091455734774 28.126396619672533 27.49563238938772 23.647056433592002 42 21.627798317962053 28.222890342501927 28.911550806484378 21.237760533051638 43 18.3510746353553 26.940031690570027 32.3253971478487 22.38349652622598 44 18.353106082151708 24.021858367529354 30.701255434120178 26.92378011619876 45 21.306829724129525 22.326616015926543 28.71450046723276 27.65205379271117 46 22.830414821435827 23.632836306017147 30.75712022102141 22.779628651525616 47 18.222077763783368 27.54337138910332 33.15829033437615 21.07626051273717 48 17.96611546743591 27.288424816154066 33.19282492991509 21.55263478649494 49 20.823345386584325 23.26209726567261 34.18010807296957 21.734449274773493 50 20.42315036769187 20.98890830049161 31.730183236501038 26.857758095315482 51 18.732986633080078 20.51964409052127 30.161906309673746 30.5854629667249 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 299.0 1 485.5 2 672.0 3 2767.5 4 4863.0 5 3091.0 6 1319.0 7 1295.0 8 1271.0 9 1256.0 10 1241.0 11 1186.5 12 1132.0 13 1072.5 14 1013.0 15 951.0 16 889.0 17 798.5 18 708.0 19 720.5 20 733.0 21 697.0 22 661.0 23 663.5 24 666.0 25 639.0 26 709.0 27 806.0 28 857.5 29 909.0 30 1017.0 31 1125.0 32 1174.5 33 1224.0 34 1417.0 35 1610.0 36 1716.0 37 1822.0 38 2025.0 39 2228.0 40 2532.0 41 2836.0 42 3367.0 43 3898.0 44 4635.5 45 5373.0 46 6973.5 47 8574.0 48 10244.0 49 11914.0 50 11782.0 51 11650.0 52 10010.0 53 8370.0 54 6714.5 55 5059.0 56 4184.0 57 3309.0 58 2973.0 59 2637.0 60 2453.5 61 2270.0 62 2143.5 63 2017.0 64 1776.5 65 1536.0 66 1337.5 67 1139.0 68 939.5 69 740.0 70 628.5 71 517.0 72 436.0 73 355.0 74 280.5 75 161.5 76 117.0 77 91.5 78 66.0 79 48.0 80 30.0 81 25.0 82 20.0 83 15.0 84 10.0 85 6.5 86 3.0 87 3.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 98452.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.08454881566652 #Duplication Level Percentage of deduplicated Percentage of total 1 77.91910864944934 49.15491813269411 2 12.524956527339473 15.802624629260958 3 4.688606942744896 8.873359606711901 4 1.9949120886198237 5.0339251615000205 5 0.9692793198943774 3.057327428594645 6 0.5184517292458298 1.9623776053305164 7 0.3349004959103497 1.4788932677853168 8 0.23829458362851805 1.2026165034737741 9 0.13363817865653377 0.7587453784585382 >10 0.6392091195981194 6.814488278551985 >50 0.017711083918335802 0.7211636127249827 >100 0.01932118245636633 2.0791857961239995 >500 0.0 0.0 >1k 0.0016100985380305274 3.0603745987892577 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3013 3.0603745987892577 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCC 272 0.2762767643115427 No Hit CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT 269 0.2732295941169301 Illumina Single End Adapter 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC 254 0.257993743143867 Illumina Single End Adapter 2 (95% over 21bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 198 0.20111323284443178 No Hit GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC 191 0.1940031690570024 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC 166 0.16861008410189737 Illumina Single End Adapter 2 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 143 0.14524844594320074 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC 117 0.11883963758989152 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC 116 0.11782391419168732 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 112 0.11376102059887051 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 107 0.10868240360784952 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC 102 0.1036037866168285 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2976069556738309 0.0 2 0.0 0.0 0.0 0.9943932068419128 0.0 3 0.0 0.0 0.0 1.3712265875756713 0.0 4 0.0 0.0 0.0 2.117783285255759 0.0 5 0.0 0.0 0.0 3.748019339373502 0.0 6 0.0 0.0 0.0 5.364035265916385 0.0 7 0.0 0.0 0.0 6.760654938447162 0.0 8 0.0 0.0 0.0 8.813431926217852 0.0 9 0.0 0.0 0.0 9.7682119205298 0.0 10 0.0 0.0 0.0 11.993661885995206 0.0 11 0.0 0.0 0.0 17.09665623857311 0.0 12 0.0 0.0 0.0 22.085889570552148 0.0 13 0.0 0.0 0.0 23.598301710478204 0.0 14 0.0 0.0 0.0 24.1051476861821 0.0 15 0.0 0.0 0.0 24.785682362978914 0.0 16 0.0 0.0 0.0 26.433185714866127 0.0 17 0.0 0.0 0.0 28.53471742575062 0.0 18 0.0 0.0 0.0 30.562101328566204 0.0 19 0.0 0.0 0.0 31.82058261894121 0.0 20 0.0 0.0 0.0 32.89318652744485 0.0 21 0.0 0.0 0.0 34.23902003006541 0.0 22 0.0 0.0 0.0 35.42233778897331 0.0 23 0.0 0.0 0.0 36.27960833705765 0.0 24 0.0 0.0 0.0 36.79559582334539 0.0 25 0.0 0.0 0.0 37.09421850241742 0.0 26 0.0 0.0 0.0 37.35221224556129 0.0 27 0.0 0.0 0.0 37.571608499573394 0.0 28 0.001015723398204201 0.0 0.0 37.77780034940885 0.0 29 0.001015723398204201 0.0 0.0 38.01141673099581 0.0 30 0.001015723398204201 0.0 0.0 38.26331613375046 0.0 31 0.001015723398204201 0.0 0.0 38.44005200503799 0.0 32 0.001015723398204201 0.0 0.0 38.62288221671474 0.0 33 0.001015723398204201 0.0 0.0 38.782350790232805 0.0 34 0.001015723398204201 0.0 0.0 38.90931621500833 0.0 35 0.001015723398204201 0.0 0.0 39.08097346930484 0.0 36 0.001015723398204201 0.0 0.0 39.23028480884086 0.0 37 0.001015723398204201 0.0 0.0 39.40702068012839 0.0 38 0.001015723398204201 0.0 0.0 39.56953642384106 0.0 39 0.001015723398204201 0.0 0.0 39.73103644415553 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCTAG 20 7.001866E-4 45.000004 14 AATCCTA 20 7.001866E-4 45.000004 13 GCTGGGT 20 7.001866E-4 45.000004 4 GACGTGG 20 7.001866E-4 45.000004 25 TATGGGA 30 2.145267E-6 45.000004 4 ATCAGAC 20 7.001866E-4 45.000004 21 CGACCTC 20 7.001866E-4 45.000004 12 TTCCGAT 20 7.001866E-4 45.000004 13 CTTGCGG 20 7.001866E-4 45.000004 2 TCAGACG 20 7.001866E-4 45.000004 22 TAGGGCC 20 7.001866E-4 45.000004 5 TCGAGCT 30 2.145267E-6 45.000004 16 TCGCATT 25 3.8647864E-5 45.0 22 CTCCGGG 25 3.8647864E-5 45.0 3 GCGCGAC 25 3.8647864E-5 45.0 9 CGCATTT 25 3.8647864E-5 45.0 23 AAATTCT 25 3.8647864E-5 45.0 33 CGGGAGT 25 3.8647864E-5 45.0 6 CGGGAGC 25 3.8647864E-5 45.0 6 AATTCTA 25 3.8647864E-5 45.0 34 >>END_MODULE