FastQCFastQC Report
Sat 14 Jan 2017
SRR2933658.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933658.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89048
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39274.40998113377055No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCC5230.587323690593837No Hit
CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC4880.5480190459078249RNA PCR Primer, Index 3 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGCT3760.4222441829125865TruSeq Adapter, Index 3 (95% over 24bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC2630.29534633006917616No Hit
TCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC2230.25042673614230526RNA PCR Primer, Index 24 (95% over 23bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2040.22908992902704162No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1990.22347497978618272No Hit
GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC1710.1920312640373731RNA PCR Primer, Index 24 (95% over 23bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1310.14711167011050222No Hit
TCCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTG1020.11454496451352081TruSeq Adapter, Index 3 (95% over 22bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1010.11342197466534902No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGAC206.998225E-445.026
TCAAGCG206.998225E-445.017
GCGATTG206.998225E-445.09
TTCGCGG206.998225E-445.02
TGTCTTG351.1951124E-745.01
TCGCGGG206.998225E-445.03
GGCGATT351.1951124E-745.08
ATGGTCA206.998225E-445.013
GGTCAAG206.998225E-445.015
GCTACGA206.998225E-445.010
GACACGA206.998225E-445.025
TTGGGCA406.693881E-945.05
CGGGATT206.998225E-445.06
GACCGAT406.693881E-945.09
TACGAAT206.998225E-445.012
CTACGAA206.998225E-445.011
TGGGCAC406.693881E-945.06
TGGGTAT206.998225E-445.06
ACGACCA206.998225E-445.028
GGGAACA406.693881E-945.07