Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933658.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 89048 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3927 | 4.40998113377055 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCC | 523 | 0.587323690593837 | No Hit |
CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC | 488 | 0.5480190459078249 | RNA PCR Primer, Index 3 (95% over 23bp) |
CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGCT | 376 | 0.4222441829125865 | TruSeq Adapter, Index 3 (95% over 24bp) |
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC | 263 | 0.29534633006917616 | No Hit |
TCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC | 223 | 0.25042673614230526 | RNA PCR Primer, Index 24 (95% over 23bp) |
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 204 | 0.22908992902704162 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 199 | 0.22347497978618272 | No Hit |
GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC | 171 | 0.1920312640373731 | RNA PCR Primer, Index 24 (95% over 23bp) |
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 131 | 0.14711167011050222 | No Hit |
TCCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTG | 102 | 0.11454496451352081 | TruSeq Adapter, Index 3 (95% over 22bp) |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 101 | 0.11342197466534902 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACACGAC | 20 | 6.998225E-4 | 45.0 | 26 |
TCAAGCG | 20 | 6.998225E-4 | 45.0 | 17 |
GCGATTG | 20 | 6.998225E-4 | 45.0 | 9 |
TTCGCGG | 20 | 6.998225E-4 | 45.0 | 2 |
TGTCTTG | 35 | 1.1951124E-7 | 45.0 | 1 |
TCGCGGG | 20 | 6.998225E-4 | 45.0 | 3 |
GGCGATT | 35 | 1.1951124E-7 | 45.0 | 8 |
ATGGTCA | 20 | 6.998225E-4 | 45.0 | 13 |
GGTCAAG | 20 | 6.998225E-4 | 45.0 | 15 |
GCTACGA | 20 | 6.998225E-4 | 45.0 | 10 |
GACACGA | 20 | 6.998225E-4 | 45.0 | 25 |
TTGGGCA | 40 | 6.693881E-9 | 45.0 | 5 |
CGGGATT | 20 | 6.998225E-4 | 45.0 | 6 |
GACCGAT | 40 | 6.693881E-9 | 45.0 | 9 |
TACGAAT | 20 | 6.998225E-4 | 45.0 | 12 |
CTACGAA | 20 | 6.998225E-4 | 45.0 | 11 |
TGGGCAC | 40 | 6.693881E-9 | 45.0 | 6 |
TGGGTAT | 20 | 6.998225E-4 | 45.0 | 6 |
ACGACCA | 20 | 6.998225E-4 | 45.0 | 28 |
GGGAACA | 40 | 6.693881E-9 | 45.0 | 7 |