##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933658.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 89048 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.0983402210044 33.0 31.0 34.0 30.0 34.0 2 32.27841164315875 34.0 31.0 34.0 30.0 34.0 3 32.379424580001796 34.0 31.0 34.0 30.0 34.0 4 35.93266552870362 37.0 35.0 37.0 35.0 37.0 5 35.948230167999284 37.0 35.0 37.0 35.0 37.0 6 35.905354415596086 37.0 35.0 37.0 35.0 37.0 7 35.94104303297098 37.0 35.0 37.0 35.0 37.0 8 35.75960156320187 37.0 35.0 37.0 35.0 37.0 9 37.59223115623035 39.0 37.0 39.0 35.0 39.0 10 37.13969993711257 39.0 37.0 39.0 33.0 39.0 11 37.14924535082203 39.0 37.0 39.0 34.0 39.0 12 37.191660677387475 39.0 37.0 39.0 34.0 39.0 13 37.17515272661935 39.0 37.0 39.0 33.0 39.0 14 38.35625729943401 40.0 38.0 41.0 34.0 41.0 15 38.37599946096487 40.0 38.0 41.0 34.0 41.0 16 38.414798760219206 40.0 38.0 41.0 34.0 41.0 17 38.342803881052916 40.0 38.0 41.0 33.0 41.0 18 38.02033734615039 39.0 37.0 40.0 34.0 41.0 19 37.68959437606684 39.0 37.0 40.0 34.0 41.0 20 37.27793998742251 39.0 35.0 40.0 33.0 41.0 21 37.1654164046357 39.0 35.0 40.0 33.0 41.0 22 37.14409082741892 39.0 35.0 40.0 33.0 41.0 23 37.063505075914115 38.0 35.0 40.0 33.0 41.0 24 36.964580900188665 38.0 35.0 40.0 33.0 41.0 25 36.86098508669482 38.0 35.0 40.0 33.0 41.0 26 36.76058979426826 38.0 35.0 40.0 32.0 41.0 27 36.664372024076904 38.0 35.0 40.0 32.0 41.0 28 36.52128065762285 38.0 35.0 40.0 32.0 41.0 29 36.40882445422693 38.0 35.0 40.0 31.0 41.0 30 36.223733267451266 38.0 35.0 40.0 31.0 41.0 31 35.91275491869553 38.0 35.0 40.0 30.0 41.0 32 35.507187135028296 38.0 35.0 40.0 27.0 41.0 33 35.12008130446501 38.0 35.0 40.0 24.0 41.0 34 34.713210852573894 38.0 35.0 40.0 21.0 41.0 35 34.44111041236187 38.0 34.0 40.0 18.0 41.0 36 34.22219477135927 38.0 34.0 40.0 18.0 41.0 37 33.976282454406615 38.0 34.0 40.0 17.0 41.0 38 33.87430374629413 38.0 34.0 40.0 16.0 41.0 39 33.83195579911958 38.0 33.0 40.0 15.0 41.0 40 33.69259275896146 38.0 33.0 40.0 15.0 41.0 41 33.56976012936843 38.0 33.0 40.0 15.0 41.0 42 33.45738253526188 38.0 33.0 40.0 15.0 41.0 43 33.29998427814213 37.0 33.0 40.0 14.0 41.0 44 33.16939178869823 37.0 33.0 40.0 12.0 41.0 45 33.176163417482705 37.0 33.0 40.0 12.0 41.0 46 32.984996855628424 37.0 32.0 40.0 12.0 41.0 47 32.81033824454227 37.0 32.0 40.0 11.0 41.0 48 32.762386578025335 37.0 32.0 40.0 10.0 41.0 49 32.80612703261163 37.0 32.0 40.0 10.0 41.0 50 32.72273380648639 37.0 32.0 40.0 10.0 41.0 51 31.69660183271943 35.0 30.0 39.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 2.0 13 4.0 14 6.0 15 6.0 16 12.0 17 15.0 18 41.0 19 59.0 20 132.0 21 230.0 22 364.0 23 502.0 24 839.0 25 1401.0 26 2160.0 27 2633.0 28 2443.0 29 2304.0 30 2341.0 31 2643.0 32 2734.0 33 3335.0 34 5010.0 35 6826.0 36 8674.0 37 10990.0 38 17737.0 39 15594.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.05610457281466 5.490297367711796 39.51464378762016 31.938954271853383 2 36.74871979157309 5.169122271134669 40.58260713323151 17.499550804060732 3 19.230078160093434 5.151154433563921 57.573443536070435 18.045323870272213 4 15.176084808193336 5.571152636780163 57.7778276884377 21.474934866588807 5 12.948072949420537 6.63911598239152 57.986703800197645 22.426107267990297 6 17.052600844488367 7.685742520887612 62.11144551253257 13.150211122091457 7 63.172670919054895 3.1567244632108524 28.842871260443804 4.82773335729045 8 62.122675411014285 3.7653849609199534 28.151109513969995 5.960830114095769 9 56.78510466265385 5.605965322073488 30.943985266373193 6.664944748899471 10 28.303836133321354 19.497349743958313 36.508399964064324 15.690414158656004 11 19.158206809810437 18.121687179947894 41.329395382265744 21.390710627975924 12 17.35805408319109 15.176084808193336 47.48001078070254 19.985850327913035 13 20.006064145180126 16.043032970981944 48.56257299434013 15.388329889497799 14 17.598373910699845 18.17671368250831 46.84889048603 17.376021920761836 15 13.92507411732998 17.47484502740095 48.53337525828766 20.066705596981404 16 14.327104482975475 16.640463570209324 46.73659150121283 22.295840445602373 17 14.05309496002156 17.310888509567874 44.39403467792651 24.241981852484056 18 15.207528523942143 16.48436798131345 46.93985266373192 21.368250831012485 19 15.473677117958854 18.90553409397179 47.09257928308328 18.528209504986076 20 16.37656095588896 20.83819962267541 44.70173389632558 18.083505525110052 21 16.414742610726798 21.786003054532387 44.63435450543527 17.164899829305543 22 13.633096756805319 20.710178779983828 43.55628425119037 22.100440212020484 23 14.023897223969096 21.049321714131704 41.504581798580546 23.42219926331866 24 15.26929296559159 20.433923277333573 41.82575689515767 22.471026861917167 25 14.578654208965952 22.038675770371036 40.030096127931 23.35257389273201 26 13.618497888779086 22.678779983828946 42.18848261611715 21.51423951127482 27 15.632018686551074 21.796109963165932 43.3047345251999 19.2671368250831 28 13.712829036025514 19.94991465277154 44.26039888599407 22.076857425208875 29 16.387790854370678 18.4159105201689 42.469230078160095 22.727068547300334 30 20.22280118587728 19.751145449645136 40.31982750875932 19.706225855718266 31 19.29858054083191 24.39583146168359 37.14401221812955 19.161575779354955 32 18.174467702811967 23.63107537507861 37.24283532476866 20.95162159734076 33 21.529961369149223 20.358682957506062 34.39381007995688 23.717545593387836 34 19.047030814841435 20.47098194232324 36.81385320276705 23.668134040068278 35 19.98921929745755 20.240769023448028 37.30347677656994 22.466534902524483 36 23.500808552690682 21.921884826161172 36.19171682687988 18.38558979426826 37 23.405354415596083 22.64845925792831 36.62968286766687 17.316503458808732 38 23.241397897763004 21.627661485940166 35.29557092803881 19.835369688258016 39 23.926421705147785 20.536115353517204 32.03890036834067 23.49856257299434 40 20.25424490162609 22.649582247776483 35.070972958404454 22.025199892192976 41 19.610771718623663 23.560327014643786 35.78519450184171 21.043706764890846 42 23.768080136555568 20.391249663103046 37.35738028928218 18.483289911059202 43 24.843904411104123 18.275536789147427 37.766148594016705 19.11441020573174 44 22.127391968376607 18.652861378133142 35.39888599407061 23.820860659419637 45 22.92246878088222 18.264306890665708 33.70317132333124 25.110053005120836 46 23.041505704788428 19.94879166292337 37.20802263947534 19.801679992812865 47 19.268259814931273 22.696747821399697 39.59886802623304 18.436124337435988 48 19.459168089120475 20.961728505974307 40.04357200610906 19.535531398796156 49 22.65744317671368 17.676983200071874 39.386622944928575 20.278950678285867 50 21.461458988410744 17.03575599676579 36.527490791483245 24.97529422334022 51 19.113287215883567 16.988590423142576 34.91150839996406 28.986613961009795 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 362.0 1 655.0 2 948.0 3 3755.0 4 6562.0 5 4105.5 6 1649.0 7 1583.0 8 1517.0 9 1430.5 10 1344.0 11 1300.5 12 1257.0 13 1159.5 14 1062.0 15 982.5 16 903.0 17 851.0 18 799.0 19 748.5 20 698.0 21 659.5 22 621.0 23 590.0 24 559.0 25 572.0 26 606.5 27 628.0 28 625.0 29 622.0 30 675.0 31 728.0 32 776.5 33 825.0 34 956.5 35 1088.0 36 1211.5 37 1335.0 38 1507.5 39 1680.0 40 2059.0 41 2438.0 42 2976.5 43 3515.0 44 3989.5 45 4464.0 46 5735.0 47 7006.0 48 8659.0 49 10312.0 50 10355.0 51 10398.0 52 8698.5 53 6999.0 54 5468.5 55 3938.0 56 3465.5 57 2993.0 58 2701.0 59 2409.0 60 2303.5 61 2198.0 62 1990.5 63 1783.0 64 1684.5 65 1586.0 66 1336.5 67 1087.0 68 926.0 69 765.0 70 633.0 71 501.0 72 445.5 73 390.0 74 298.0 75 171.0 76 136.0 77 112.0 78 88.0 79 57.5 80 27.0 81 26.5 82 26.0 83 17.5 84 9.0 85 5.0 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 89048.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.46127931003503 #Duplication Level Percentage of deduplicated Percentage of total 1 79.68360142273185 50.56823286317492 2 12.017129408433757 15.252448117869013 3 4.331899984073897 8.247237444973496 4 1.6439277308842526 4.1730302758063065 5 0.7909964431703562 2.5098823106639117 6 0.3839960361699492 1.4621327823196477 7 0.21765673939586985 0.9668942592758961 8 0.15749146183928792 0.799568771898302 9 0.12917839004795525 0.7378043302488545 >10 0.5945745076179859 6.572859581349384 >50 0.028313071791332658 1.1768933608840177 >100 0.017695669869582913 2.5357110771718627 >500 0.0017695669869582911 0.587323690593837 >1k 0.0017695669869582911 4.40998113377055 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3927 4.40998113377055 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCC 523 0.587323690593837 No Hit CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 488 0.5480190459078249 RNA PCR Primer, Index 3 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGCT 376 0.4222441829125865 TruSeq Adapter, Index 3 (95% over 24bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC 263 0.29534633006917616 No Hit TCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 223 0.25042673614230526 RNA PCR Primer, Index 24 (95% over 23bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 204 0.22908992902704162 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 199 0.22347497978618272 No Hit GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 171 0.1920312640373731 RNA PCR Primer, Index 24 (95% over 23bp) CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 131 0.14711167011050222 No Hit TCCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTG 102 0.11454496451352081 TruSeq Adapter, Index 3 (95% over 22bp) TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 101 0.11342197466534902 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4447039798760219 0.0 2 0.0 0.0 0.0 1.555340939717905 0.0 3 0.0 0.0 0.0 2.1246967927409934 0.0 4 0.0 0.0 0.0 2.86362411283802 0.0 5 0.0 0.0 0.0 4.6379480729494205 0.0 6 0.0 0.0 0.0 6.161845296918516 0.0 7 0.0 0.0 0.0 7.400503099451981 0.0 8 0.0 0.0 0.0 9.28824903422873 0.0 9 0.0 0.0 0.0 10.07995687718983 0.0 10 0.0 0.0 0.0 12.105830563291708 0.0 11 0.0 0.0 0.0 16.94816278860839 0.0 12 0.0 0.0 0.0 21.24921390710628 0.0 13 0.0 0.0 0.0 22.638352349294763 0.0 14 0.0 0.0 0.0 23.199847273380648 0.0 15 0.0 0.0 0.0 23.964603359985627 0.0 16 0.0 0.0 0.0 25.874809091725812 0.0 17 0.0 0.0 0.0 28.125280747462043 0.0 18 0.0 0.0 0.0 30.15676938280478 0.0 19 0.0 0.0 0.0 31.39205821579373 0.0 20 0.0 0.0 0.0 32.4555296020124 0.0 21 0.0 0.0 0.0 33.69194142484952 0.0 22 0.0 0.0 0.0 34.77674961818345 0.0 23 0.0 0.0 0.0 35.57519540023358 0.0 24 0.0 0.0 0.0 36.050220106010244 0.0 25 0.0 0.0 0.0 36.371395202587365 0.0 26 0.0 0.0 0.0 36.60946905039978 0.0 27 0.0 0.0 0.0 36.823960111400595 0.0 28 0.0 0.0 0.0 37.00476147695625 0.0 29 0.0 0.0 0.0 37.18219387296739 0.0 30 0.0 0.0 0.0 37.39331596442368 0.0 31 0.0 0.0 0.0 37.55053454316773 0.0 32 0.0 0.0 0.0 37.711122091456296 0.0 33 0.0 0.0 0.0 37.88630850777109 0.0 34 0.0 0.0 0.0 38.02668223879256 0.0 35 0.0 0.0 0.0 38.19176174647381 0.0 36 0.0 0.0 0.0 38.35010331506603 0.0 37 0.0 0.0 0.0 38.50844488365825 0.0 38 0.0 0.0 0.0 38.66678645225047 0.0 39 0.0 0.0 0.0 38.81951307160183 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAC 20 6.998225E-4 45.0 26 TCAAGCG 20 6.998225E-4 45.0 17 GCGATTG 20 6.998225E-4 45.0 9 TTCGCGG 20 6.998225E-4 45.0 2 TGTCTTG 35 1.1951124E-7 45.0 1 TCGCGGG 20 6.998225E-4 45.0 3 GGCGATT 35 1.1951124E-7 45.0 8 ATGGTCA 20 6.998225E-4 45.0 13 GGTCAAG 20 6.998225E-4 45.0 15 GCTACGA 20 6.998225E-4 45.0 10 GACACGA 20 6.998225E-4 45.0 25 TTGGGCA 40 6.693881E-9 45.0 5 CGGGATT 20 6.998225E-4 45.0 6 GACCGAT 40 6.693881E-9 45.0 9 TACGAAT 20 6.998225E-4 45.0 12 CTACGAA 20 6.998225E-4 45.0 11 TGGGCAC 40 6.693881E-9 45.0 6 TGGGTAT 20 6.998225E-4 45.0 6 ACGACCA 20 6.998225E-4 45.0 28 GGGAACA 40 6.693881E-9 45.0 7 >>END_MODULE