SRR2933657.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933657.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	90196
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3760	4.1686992771298055	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCC	550	0.60978313894186	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	545	0.6042396558605703	RNA PCR Primer, Index 3 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGCT	408	0.45234821943323433	TruSeq Adapter, Index 3 (95% over 24bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC	268	0.2971306931571245	No Hit
TCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	232	0.2572176149718391	RNA PCR Primer, Index 24 (95% over 23bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	215	0.23836977249545435	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	196	0.21730453678655373	No Hit
GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	183	0.2028914807752007	RNA PCR Primer, Index 24 (95% over 23bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	140	0.1552175262761098	No Hit
TCCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTG	112	0.12417402102088784	TruSeq Adapter, Index 3 (95% over 22bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98	0.10865226839327687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTTTAG	20	6.99871E-4	45.0	1
ACACGAC	25	3.8621743E-5	45.0	26
GCGACCT	25	3.8621743E-5	45.0	11
TATGGGA	25	3.8621743E-5	45.0	4
GGTCAAG	25	3.8621743E-5	45.0	15
CACGACC	25	3.8621743E-5	45.0	27
TGAAACA	20	6.99871E-4	45.0	38
GGGAATC	25	3.8621743E-5	45.0	7
GGGCGCG	20	6.99871E-4	45.0	7
CCTCAGC	20	6.99871E-4	45.0	16
GCGGGAT	20	6.99871E-4	45.0	5
AAACACG	20	6.99871E-4	45.0	40
TAGGGAT	35	1.1953489E-7	45.0	5
AGACACG	25	3.8621743E-5	45.0	24
CGAGACA	25	3.8621743E-5	45.0	22
CCGCGGG	25	3.8621743E-5	45.0	3
AGGGCAC	20	6.99871E-4	45.0	11
TCAAGCG	25	3.8621743E-5	45.0	17
GCTCCAC	20	6.99871E-4	45.0	12
ACGACCA	25	3.8621743E-5	45.0	28